Ss1.1-Mixn-0010k22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAGCTCGGCTTCGACTGGGACAGAGAGATTACCCGTTGGTGGTCCATGCCGTGGTGG ACGAAGGAGACGAGTATTTTGGCCACTGCCACGTCCTGCTGGGCACTTTTGAAAAGCACA CGGACGGGACTTTCTGCGTCAAGCCCCTCAAGCAGAAACAAGTTGTGGACGGGGTCAGCT ACCTCCTTCAGGAGATCTACGGGATTGAAAACAAGTACAACACGCAGGAGTCGAAGCAGG TGGCTGAGGATGAAGTGAGCGACAACAGCGCCGAGTGCGTGGTGTGCCTCTCCGACGTGC GGGACACCCTGATCCTGCCCTGCCGCCACCTCTGCCTGTGTAACACCTGCGCAGACACCC TGCGCTACCAGGCCAACAACTGCCCCATCTGCCGACTGCCCTTCCGGGCACTGCTGCAGA TCCGAGCCATGAGGAAGAAGCTGGGCCCCCTGTCCCCAACCAGCTTTAACCCCATCATCT CCTCCCAGACATCTGACTCGGAAGAGCACTCATCCTCAGAGAACATTCCGCCAGGCTACG AAGTGGTGTCTCTCCTGGAGGCCCTCAATGGGCCCCTCGCCCCGTCCCCAGCGGGGCCCC CGCTCCACGTGCTTGGAGACGGCCACCTCTCAGGAATGCTGCCTTCCTACGGCAGTGACG GCCACCTGCCTCCCGTGCGGACGCTGTCCCCCCTCGACCGCCTGTCCAACTGCGGCAGCC AGGGACTCAAGCTCAAAAAGTCTCTCTCCAAGTCCATCTCCCAAAATTCTTCTGTGGGGC ACGAAGAGGAAGACGAGCGTTCTTGCAGCGAATCGGAGACGCAGCTGTCCCATCGGCTGT CAGCCCCGCATCTCGGGGAGGAATGTGACGGCACCCCAGAAAGTGAGAACCTGACCATGT CATCGTCAGGCGCTGTCGACCAGTCGTCCTGCACAGGGACGCCTCTGTCATCCACAATTT CCTCCCCAGAAGACCCGGCCAGCAGCAGTCTGGCCCAGTCGGTCATGTCCATGGTGTCCT CCCAGAGCCAGCACTCGCAGGTCAGCACCGACACCGTCTCCTCCATGTCCGGCTCCTACA TCGCGCCTGGCACCGAAAAGAAGGGGGAGGCCCTGCCCTCCCCCCAGGCCGCCAGCCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAGCTCGGCTTCGACTGGGACAGAGAGATTACCCGTTGGTGGTCCATGCCGTGGTGG ACGAAGGAGACGAGTATTTTGGCCACTGCCACGTCCTGCTGGGCACTTTTGAAAAGCACA CGGACGGGACTTTCTGCGTCAAGCCCCTCAAGCAGAAACAAGTTGTGGACGGGGTCAGCT ACCTCCTTCAGGAGATCTACGGGATTGAAAACAAGTACAACACGCAGGAGTCGAAGCAGG TGGCTGAGGATGAAGTGAGCGACAACAGCGCCGAGTGCGTGGTGTGCCTCTCCGACGTGC GGGACACCCTGATCCTGCCCTGCCGCCACCTCTGCCTGTGTAACACCTGCGCAGACACCC TGCGCTACCAGGCCAACAACTGCCCCATCTGCCGACTGCCCTTCCGGGCACTGCTGCAGA TCCGAGCCATGAGGAAGAAGCTGGGCCCCCTGTCCCCAACCAGCTTTAACCCCATCATCT CCTCCCAGACATCTGACTCGGAAGAGCACTCATCCTCAGAGAACATTCCGCCAGGCTACG AAGTGGTGTCTCTCCTGGAGGCCCTCAATGGGCCCCTCGCCCCGTCCCCAGCGGGGCCCC CGCTCCACGTGCTTGGAGACGGCCACCTCTCAGGAATGCTGCCTTCCTACGGCAGTGACG GCCACCTGCCTCCCGTGCGGACGCTGTCCCCCCTCGACCGCCTGTCCAACTGCGGCAGCC AGGGACTCAAGCTCAAAAAGTCTCTCTCCAAGTCCATCTCCCAAAATTCTTCTGTGGGGC ACGAAGAGGAAGACGAGCGTTCTTGCAGCGAATCGGAGACGCAGCTGTCCCATCGGCTGT CAGCCCCGCATCTCGGGGAGGAATGTGACGGCACCCCAGAAAGTGAGAACCTGACCATGT CATCGTCAGGCGCTGTCGACCAGTCGTCCTGCACAGGGACGCCTCTGTCATCCACAATTT CCTCCCCAGAAGACCCGGCCAGCAGCAGTCTGGCCCAGTCGGTCATGTCCATGGTGTCCT CCCAGAGCCAGCACTCGCAGGTCAGCACCGACACCGTCTCCTCCATGTCCGGCTCCTACA TCGCGCCTGGCACCGAAAAGAAGGGGGAGGCCCTGCCCTCCCCCCAGGCCGCCAGCCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 400-511, - strand, RNAz p=0.880132 | |
| 513-671, - strand, RNAz p=0.912132 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 400-511, - strand, RNAz p=0.880132 | |
| 513-671, - strand, RNAz p=0.912132 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-316, gnl|bosTau2|chr16 (6963311-6963627) | |
| 1-316, gnl|Hg17|chr16 (4654715-4663576) | |
| 1-316, gnl|Mm7|chr16 (4587266-4596134) | |
| 400-511, gnl|bosTau2|chr19 (49449307-49449418) | |
| 400-511, gnl|canFam2|chr9 (7491890-7491736) | |
| 400-511, gnl|danRer3|chr14 (51783789-51783660) | |
| 400-511, gnl|dasNov1|scaffold_6551 (46868-46713) | |
| 400-511, gnl|echTel1|scaffold_281677 (11924-12076) | |
| 400-511, gnl|fr1|chrUn (238283666-238283797) | |
| 400-511, gnl|galGal2|chr18 (4302227-4302075) | |
| 400-511, gnl|hg17|chr17 (71669195-71669350) | |
| 400-511, gnl|Hg17|chr17 (71669323-71669212) | |
| 400-511, gnl|loxAfr1|scaffold_5060 (64185-64033) | |
| 400-511, gnl|mm7|chr11 (116463394-116463549) | |
| 400-511, gnl|Mm7|chr11 (116463522-116463411) | |
| 400-511, gnl|monDom2|scaffold_18 (34102455-34102617) | |
| 400-511, gnl|oryCun1|scaffold_150798 (8011-8164) | |
| 400-511, gnl|panTro1|chr19 (75031083-75031238) | |
| 400-511, gnl|rheMac2|chr16 (71501677-71501832) | |
| 400-511, gnl|rn3|chr10 (10768113-10768250) | |
| 400-511, gnl|tetNig1|chr2 (46186-46055) | |
| 400-511, gnl|xenTro1|scaffold_591 (771581-771724) | |
| 513-753, gnl|bosTau2|chr19 (49451494-49451734) | |
| 513-753, gnl|Hg17|chr17 (71667249-71667009) | |
| 513-753, gnl|Mm7|chr11 (116459243-116459003) | |
| 951-1139, gnl|bosTau2|chr19 (49454854-49455042) | |
| 951-1139, gnl|Hg17|chr17 (71663432-71663259) | |
| 951-1139, gnl|Mm7|chr11 (116456578-116456405) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-316, gnl|bosTau2|chr16 (6963311-6963627) | |
| 1-316, gnl|Hg17|chr16 (4654715-4663576) | |
| 1-316, gnl|Mm7|chr16 (4587266-4596134) | |
| 400-511, gnl|bosTau2|chr19 (49449307-49449418) | |
| 400-511, gnl|canFam2|chr9 (7491890-7491736) | |
| 400-511, gnl|danRer3|chr14 (51783789-51783660) | |
| 400-511, gnl|dasNov1|scaffold_6551 (46868-46713) | |
| 400-511, gnl|echTel1|scaffold_281677 (11924-12076) | |
| 400-511, gnl|fr1|chrUn (238283666-238283797) | |
| 400-511, gnl|galGal2|chr18 (4302227-4302075) | |
| 400-511, gnl|hg17|chr17 (71669195-71669350) | |
| 400-511, gnl|Hg17|chr17 (71669323-71669212) | |
| 400-511, gnl|loxAfr1|scaffold_5060 (64185-64033) | |
| 400-511, gnl|mm7|chr11 (116463394-116463549) | |
| 400-511, gnl|Mm7|chr11 (116463522-116463411) | |
| 400-511, gnl|monDom2|scaffold_18 (34102455-34102617) | |
| 400-511, gnl|oryCun1|scaffold_150798 (8011-8164) | |
| 400-511, gnl|panTro1|chr19 (75031083-75031238) | |
| 400-511, gnl|rheMac2|chr16 (71501677-71501832) | |
| 400-511, gnl|rn3|chr10 (10768113-10768250) | |
| 400-511, gnl|tetNig1|chr2 (46186-46055) | |
| 400-511, gnl|xenTro1|scaffold_591 (771581-771724) | |
| 513-753, gnl|bosTau2|chr19 (49451494-49451734) | |
| 513-753, gnl|Hg17|chr17 (71667249-71667009) | |
| 513-753, gnl|Mm7|chr11 (116459243-116459003) | |
| 951-1139, gnl|bosTau2|chr19 (49454854-49455042) | |
| 951-1139, gnl|Hg17|chr17 (71663432-71663259) | |
| 951-1139, gnl|Mm7|chr11 (116456578-116456405) |