Ss1.1-Mixn-0011f02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAGGCGTGGGATGCCCTCGGTGGGCCTGGTGGATGGTACTCCTGTCGACATGGACCA TCCCTATGTCTTCAGCGATATGACCTCCTACTTCACCCTGCTGGTTGGCATCTACTTCCC CTCAGTCACAGGGATCATGGCGGGTTCTAACCGCTCTGGGGACCTGCGGGATGCCCAGAA GTCAATTCCCACTGGCACCATCCTGGCCATCGCCACCACCTCTGCTGTCTACATCAGCTC CGTTGTTCTGTTTGGGGCCTGCATTGAGGGGGTCGTCCTTCGGGACAAGTTTGGCGAAGC TGTGAACGGCAACCTGGTAGTGGGCACCCTGGCCTGGCCGTCCCCCTGGGTTATTGTCAT CGGATCCTTCTTCTCTACCTGTGGGGCTGGGCTGCAGAGCCTCACGGGGGCCCCACGCCT GCTGCAGGCCATCTCCCGTGATGGCATAGTGCCCTTCCTGCAGGTTTTTGGCCATGGCAA AGCCAACGGAGAGCCAACATGGGCCCTGCTCCTCACCGCCTGCATCTGCGAGATTGGCAT CCTCATCGCGTCCCTCGACGAGGTCGCCCCCATCCTCTCTATGTTCTTCCTGATGTGCTA CATGTTTGTGAACCTGGCTTGTGCAGTACAGACGCTGCTGAGGACACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAGGCGTGGGATGCCCTCGGTGGGCCTGGTGGATGGTACTCCTGTCGACATGGACCA TCCCTATGTCTTCAGCGATATGACCTCCTACTTCACCCTGCTGGTTGGCATCTACTTCCC CTCAGTCACAGGGATCATGGCGGGTTCTAACCGCTCTGGGGACCTGCGGGATGCCCAGAA GTCAATTCCCACTGGCACCATCCTGGCCATCGCCACCACCTCTGCTGTCTACATCAGCTC CGTTGTTCTGTTTGGGGCCTGCATTGAGGGGGTCGTCCTTCGGGACAAGTTTGGCGAAGC TGTGAACGGCAACCTGGTAGTGGGCACCCTGGCCTGGCCGTCCCCCTGGGTTATTGTCAT CGGATCCTTCTTCTCTACCTGTGGGGCTGGGCTGCAGAGCCTCACGGGGGCCCCACGCCT GCTGCAGGCCATCTCCCGTGATGGCATAGTGCCCTTCCTGCAGGTTTTTGGCCATGGCAA AGCCAACGGAGAGCCAACATGGGCCCTGCTCCTCACCGCCTGCATCTGCGAGATTGGCAT CCTCATCGCGTCCCTCGACGAGGTCGCCCCCATCCTCTCTATGTTCTTCCTGATGTGCTA CATGTTTGTGAACCTGGCTTGTGCAGTACAGACGCTGCTGAGGACACC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 346-465, - strand, RNAz p=0.645325 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-465, - strand, RNAz p=0.645325 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr13 (54813754-54813885) | |
| 1-132, gnl|canFam2|chr24 (36283133-36283319) | |
| 1-132, gnl|danRer3|chr8 (33805678-33805501) | |
| 1-132, gnl|dasNov1|scaffold_223449 (744-930) | |
| 1-132, gnl|echTel1|scaffold_324580 (67209-67023) | |
| 1-132, gnl|fr1|chrUn (208376598-208376781) | |
| 1-132, gnl|galGal2|chr20 (10065987-10066165) | |
| 1-132, gnl|hg17|chr20 (44105192-44105378) | |
| 1-132, gnl|Hg17|chr20 (44105239-44105370) | |
| 1-132, gnl|loxAfr1|scaffold_6601 (11966-11790) | |
| 1-132, gnl|mm7|chr2 (164723459-164723645) | |
| 1-132, gnl|Mm7|chr2 (164723506-164723637) | |
| 1-132, gnl|monDom2|scaffold_35 (25377038-25377224) | |
| 1-132, gnl|oryCun1|scaffold_204307 (21974-22150) | |
| 1-132, gnl|panTro1|chr21 (46630482-46630668) | |
| 1-132, gnl|rheMac2|chr10 (18442861-18442675) | |
| 1-132, gnl|rn3|chr3 (155926010-155926196) | |
| 1-132, gnl|tetNig1|chr9 (6352070-6351890) | |
| 1-132, gnl|xenTro1|scaffold_131 (1363970-1363793) | |
| 286-465, gnl|bosTau2|chr13 (54815433-54815612) | |
| 286-465, gnl|canFam2|chr24 (36285784-36285968) | |
| 286-465, gnl|danRer3|chr8 (33804039-33803855) | |
| 286-465, gnl|dasNov1|scaffold_223449 (3526-3710) | |
| 286-465, gnl|echTel1|scaffold_301365 (22332-22145) | |
| 286-465, gnl|fr1|chrUn (208378181-208378363) | |
| 286-465, gnl|galGal2|chr11 (3386980-3387163) | |
| 286-465, gnl|hg17|chr20 (44107011-44107195) | |
| 286-465, gnl|Hg17|chr20 (44107009-44107188) | |
| 286-465, gnl|loxAfr1|scaffold_6601 (10952-10771) | |
| 286-465, gnl|mm7|chr2 (164727258-164727442) | |
| 286-465, gnl|Mm7|chr2 (164727256-164727435) | |
| 286-465, gnl|monDom2|scaffold_35 (25378651-25378834) | |
| 286-465, gnl|oryCun1|scaffold_80909 (5263-5079) | |
| 286-465, gnl|panTro1|chr21 (46632300-46632484) | |
| 286-465, gnl|rheMac2|chr10 (18441045-18440861) | |
| 286-465, gnl|rn3|chr3 (155930058-155930242) | |
| 286-465, gnl|tetNig1|chr11 (7540941-7541122) | |
| 286-465, gnl|xenTro1|scaffold_131 (1359353-1359175) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr13 (54813754-54813885) | |
| 1-132, gnl|canFam2|chr24 (36283133-36283319) | |
| 1-132, gnl|danRer3|chr8 (33805678-33805501) | |
| 1-132, gnl|dasNov1|scaffold_223449 (744-930) | |
| 1-132, gnl|echTel1|scaffold_324580 (67209-67023) | |
| 1-132, gnl|fr1|chrUn (208376598-208376781) | |
| 1-132, gnl|galGal2|chr20 (10065987-10066165) | |
| 1-132, gnl|hg17|chr20 (44105192-44105378) | |
| 1-132, gnl|Hg17|chr20 (44105239-44105370) | |
| 1-132, gnl|loxAfr1|scaffold_6601 (11966-11790) | |
| 1-132, gnl|mm7|chr2 (164723459-164723645) | |
| 1-132, gnl|Mm7|chr2 (164723506-164723637) | |
| 1-132, gnl|monDom2|scaffold_35 (25377038-25377224) | |
| 1-132, gnl|oryCun1|scaffold_204307 (21974-22150) | |
| 1-132, gnl|panTro1|chr21 (46630482-46630668) | |
| 1-132, gnl|rheMac2|chr10 (18442861-18442675) | |
| 1-132, gnl|rn3|chr3 (155926010-155926196) | |
| 1-132, gnl|tetNig1|chr9 (6352070-6351890) | |
| 1-132, gnl|xenTro1|scaffold_131 (1363970-1363793) | |
| 286-465, gnl|bosTau2|chr13 (54815433-54815612) | |
| 286-465, gnl|canFam2|chr24 (36285784-36285968) | |
| 286-465, gnl|danRer3|chr8 (33804039-33803855) | |
| 286-465, gnl|dasNov1|scaffold_223449 (3526-3710) | |
| 286-465, gnl|echTel1|scaffold_301365 (22332-22145) | |
| 286-465, gnl|fr1|chrUn (208378181-208378363) | |
| 286-465, gnl|galGal2|chr11 (3386980-3387163) | |
| 286-465, gnl|hg17|chr20 (44107011-44107195) | |
| 286-465, gnl|Hg17|chr20 (44107009-44107188) | |
| 286-465, gnl|loxAfr1|scaffold_6601 (10952-10771) | |
| 286-465, gnl|mm7|chr2 (164727258-164727442) | |
| 286-465, gnl|Mm7|chr2 (164727256-164727435) | |
| 286-465, gnl|monDom2|scaffold_35 (25378651-25378834) | |
| 286-465, gnl|oryCun1|scaffold_80909 (5263-5079) | |
| 286-465, gnl|panTro1|chr21 (46632300-46632484) | |
| 286-465, gnl|rheMac2|chr10 (18441045-18440861) | |
| 286-465, gnl|rn3|chr3 (155930058-155930242) | |
| 286-465, gnl|tetNig1|chr11 (7540941-7541122) | |
| 286-465, gnl|xenTro1|scaffold_131 (1359353-1359175) |