Non-Coding RNA Search

Ss1.1-Mixn-0011f07.5

Sequence:


               
               GTTTTTTTTGTTTGTGTAGCATTCACGTCAAACATAATATGTCTGCTGTTCATCCCCATT
CAATGGCTTTTTTTTGCTGCTAGCACATATGTGTGGGTTCAGTACGTATGGCATACAGAA
AGGGGAGTGTGTTTGCCCACAGTGTCCCTCTGGATACTCTTTGTTTATATTGAAGCAGCC
ATTAGATTTAAAGATCTCAAAAATTTTCATGTAGACCTTTGTCGGCCATTTGCTGCTCAC
TGTATTGGGTACCCTGTGGTGACTTTGGGCTTTGGCTTCAAAAGTTATGTCAGCTACAAA
ATGCGGTTGAGGAAGCAAAAGGAAGTGCAGAAAGAGAACGAATTTTACATGCAGCTTCTT
CAGCAAGCCCTCCCCCCAGAGCAACAAATGCTGCAGAAGCAAGAAAAAGAGGCCGAGGAA
GCAGCCAAAGGATTACCCGATATGGATTCCTCGATCCTTATACACCACAATGGAGGTATC
CCAGCCAACAAAAAACTCTCCACAACTTTGCCAGAGATAGAATACCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTGTTTGTGTAGCATTCACGTCAAACATAATATGTCTGCTGTTCATCCCCATT
CAATGGCTTTTTTTTGCTGCTAGCACATATGTGTGGGTTCAGTACGTATGGCATACAGAA
AGGGGAGTGTGTTTGCCCACAGTGTCCCTCTGGATACTCTTTGTTTATATTGAAGCAGCC
ATTAGATTTAAAGATCTCAAAAATTTTCATGTAGACCTTTGTCGGCCATTTGCTGCTCAC
TGTATTGGGTACCCTGTGGTGACTTTGGGCTTTGGCTTCAAAAGTTATGTCAGCTACAAA
ATGCGGTTGAGGAAGCAAAAGGAAGTGCAGAAAGAGAACGAATTTTACATGCAGCTTCTT
CAGCAAGCCCTCCCCCCAGAGCAACAAATGCTGCAGAAGCAAGAAAAAGAGGCCGAGGAA
GCAGCCAAAGGATTACCCGATATGGATTCCTCGATCCTTATACACCACAATGGAGGTATC
CCAGCCAACAAAAAACTCTCCACAACTTTGCCAGAGATAGAATACCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28204900|gb|AAH42733.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28204900|gb|AAH42733.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.553924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.553924

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-118, gnl|bosTau2|chr2 (80266322-80266439)
               

               
               1-118, gnl|canFam2|chr2 (77332115-77331962)
               

               
               1-118, gnl|danRer3|chr13 (40910273-40910422)
               

               
               1-118, gnl|dasNov1|scaffold_181453 (4363-4516)
               

               
               1-118, gnl|echTel1|scaffold_322777 (2450-2603)
               

               
               1-118, gnl|fr1|chrUn (68380497-68380355)
               

               
               1-118, gnl|galGal2|chr23 (1992352-1992201)
               

               
               1-118, gnl|hg17|chr1 (25520598-25520751)
               

               
               1-118, gnl|Hg17|chr1 (25520624-25520741)
               

               
               1-118, gnl|mm7|chr4 (134214905-134214752)
               

               
               1-118, gnl|Mm7|chr4 (134214877-134214760)
               

               
               1-118, gnl|monDom2|scaffold_91 (2417929-2418085)
               

               
               1-118, gnl|panTro1|chr1_random (56614336-56614489)
               

               
               1-118, gnl|rheMac2|chr1 (28012611-28012764)
               

               
               1-118, gnl|rn3|chr5 (153616361-153616208)
               

               
               1-118, gnl|tetNig1|chr10 (3299169-3299321)
               

               
               1-118, gnl|xenTro1|scaffold_439 (742496-742649)
               


               
               228-421, gnl|bosTau2|chr2 (80271993-80272187)
               

               
               228-421, gnl|Mm7|chr4 (134209180-134208986)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr2 (80266322-80266439)
               

               
               1-118, gnl|canFam2|chr2 (77332115-77331962)
               

               
               1-118, gnl|danRer3|chr13 (40910273-40910422)
               

               
               1-118, gnl|dasNov1|scaffold_181453 (4363-4516)
               

               
               1-118, gnl|echTel1|scaffold_322777 (2450-2603)
               

               
               1-118, gnl|fr1|chrUn (68380497-68380355)
               

               
               1-118, gnl|galGal2|chr23 (1992352-1992201)
               

               
               1-118, gnl|hg17|chr1 (25520598-25520751)
               

               
               1-118, gnl|Hg17|chr1 (25520624-25520741)
               

               
               1-118, gnl|mm7|chr4 (134214905-134214752)
               

               
               1-118, gnl|Mm7|chr4 (134214877-134214760)
               

               
               1-118, gnl|monDom2|scaffold_91 (2417929-2418085)
               

               
               1-118, gnl|panTro1|chr1_random (56614336-56614489)
               

               
               1-118, gnl|rheMac2|chr1 (28012611-28012764)
               

               
               1-118, gnl|rn3|chr5 (153616361-153616208)
               

               
               1-118, gnl|tetNig1|chr10 (3299169-3299321)
               

               
               1-118, gnl|xenTro1|scaffold_439 (742496-742649)
               


               
               228-421, gnl|bosTau2|chr2 (80271993-80272187)
               

               
               228-421, gnl|Mm7|chr4 (134209180-134208986)

	1-118, gnl\|bosTau2\|chr2 (80266322-80266439)
	1-118, gnl\|canFam2\|chr2 (77332115-77331962)
	1-118, gnl\|danRer3\|chr13 (40910273-40910422)
	1-118, gnl\|dasNov1\|scaffold_181453 (4363-4516)
	1-118, gnl\|echTel1\|scaffold_322777 (2450-2603)
	1-118, gnl\|fr1\|chrUn (68380497-68380355)
	1-118, gnl\|galGal2\|chr23 (1992352-1992201)
	1-118, gnl\|hg17\|chr1 (25520598-25520751)
	1-118, gnl\|Hg17\|chr1 (25520624-25520741)
	1-118, gnl\|mm7\|chr4 (134214905-134214752)
	1-118, gnl\|Mm7\|chr4 (134214877-134214760)
	1-118, gnl\|monDom2\|scaffold_91 (2417929-2418085)
	1-118, gnl\|panTro1\|chr1_random (56614336-56614489)
	1-118, gnl\|rheMac2\|chr1 (28012611-28012764)
	1-118, gnl\|rn3\|chr5 (153616361-153616208)
	1-118, gnl\|tetNig1\|chr10 (3299169-3299321)
	1-118, gnl\|xenTro1\|scaffold_439 (742496-742649)

	228-421, gnl\|bosTau2\|chr2 (80271993-80272187)
	228-421, gnl\|Mm7\|chr4 (134209180-134208986)