Non-Coding RNA Search

Ss1.1-Mixn-0011f09.5

Sequence:


               
               TGACATGTGCCAGTCCATATTCACCTGTAGAGCAAACACAGAGATGAGACAAATAATTTT
CAAAGACTTCTGTATGGTGAGCTGGAATTAGGCAACCTGAAAAGAGCAAGCAAAAGAAAT
ATTGGGAAAGCCTGCAAAAATGGAGAAGTACTCTAAACCTCTAGAAAATGCCAACGGCTA
ATTCAGAACAACTCAGGATGGGAGCAGTTCTCTTGAGAAGTCTCATGAAATCAATCAGTG
AATATATTTGCCGGGAGTACACATGGTGCAGAACTCCAGGGGGTGTTAGAACAGGAAGAG
CAGTGTCCTTGACTACGTCACAGAGACAGTGTCAAGAACCAGTTGCCCAAGGAGATTCAG
TTTCTTCTTACTTAAGGTATTTTTAGATCATAAAAGTTAAAGCTGCTTACTACAAAAACA
TAGAAAAAATCAAACACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACATGTGCCAGTCCATATTCACCTGTAGAGCAAACACAGAGATGAGACAAATAATTTT
CAAAGACTTCTGTATGGTGAGCTGGAATTAGGCAACCTGAAAAGAGCAAGCAAAAGAAAT
ATTGGGAAAGCCTGCAAAAATGGAGAAGTACTCTAAACCTCTAGAAAATGCCAACGGCTA
ATTCAGAACAACTCAGGATGGGAGCAGTTCTCTTGAGAAGTCTCATGAAATCAATCAGTG
AATATATTTGCCGGGAGTACACATGGTGCAGAACTCCAGGGGGTGTTAGAACAGGAAGAG
CAGTGTCCTTGACTACGTCACAGAGACAGTGTCAAGAACCAGTTGCCCAAGGAGATTCAG
TTTCTTCTTACTTAAGGTATTTTTAGATCATAAAAGTTAAAGCTGCTTACTACAAAAACA
TAGAAAAAATCAAACACAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-196, - strand, RNAz p=0.649689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, - strand, RNAz p=0.649689

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-444, gnl|bosTau2|chr11 (87139329-87139741)
               

               
               40-444, gnl|canFam2|chr21 (3205839-3205587)
               

               
               40-444, gnl|hg17|chr11 (100699317-100699579)
               

               
               40-444, gnl|panTro1|chr9_random (173965-173701)
               

               
               40-444, gnl|rheMac2|chr14 (99949083-99949318)
               

               
               40-444, gnl|rn3|chr8 (5659470-5659255)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-444, gnl|bosTau2|chr11 (87139329-87139741)
               

               
               40-444, gnl|canFam2|chr21 (3205839-3205587)
               

               
               40-444, gnl|hg17|chr11 (100699317-100699579)
               

               
               40-444, gnl|panTro1|chr9_random (173965-173701)
               

               
               40-444, gnl|rheMac2|chr14 (99949083-99949318)
               

               
               40-444, gnl|rn3|chr8 (5659470-5659255)

	40-444, gnl\|bosTau2\|chr11 (87139329-87139741)
	40-444, gnl\|canFam2\|chr21 (3205839-3205587)
	40-444, gnl\|hg17\|chr11 (100699317-100699579)
	40-444, gnl\|panTro1\|chr9_random (173965-173701)
	40-444, gnl\|rheMac2\|chr14 (99949083-99949318)
	40-444, gnl\|rn3\|chr8 (5659470-5659255)