Non-Coding RNA Search

Ss1.1-Mixn-0011h07.5

Sequence:


               
               TCCGGGATAACTTCCTTGAATTTGCAGAATCAGATCAGTTTATGAAACTCACATTTGAGC
AAATTAACGAACTTCTTATAGATGATGACTTACAGTTGCCTTCTGAAATAGTAGCATTCC
AGATTGCAATGAAATGGTTAGAATCTGACCAAAAGAGAGTGAAATACGCTGCCGATCTTT
TGAGCAATATTCGCTTTGGTACCATCTCTGCACAAGACCTGGTCAATTATGTTCAGTCAG
TACCAAGAATGATGCAAGATGCTGACTGTCACAAGCTTCTTGTAGATGCTATGAACTACC
ACTTACTTCCCTATCATCAAAACACGTTGCAGTCTAGACGCACGAGAATCCGAGGGGGCT
GTCGTGTCCTTGTCACTGTAGGGGGCCGTCCAGGCCTTACTGAGAAGTCCCTTAGTAGAG
ATGTTTTGTACAGAGACCCTGAATATGGATGGAGCAAACTTACAGAGATGCCAGCCAAGA
GTTTTAATCAGTGTGTGGCTGTGATGGATGGATTCCTTTATGTGGCAGGTGGTGAAGACC
AGAATGATGCAAGAAATCAAGCCAAGCATGCAGTCAGCAATTTCTGCAGATACGACCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGGATAACTTCCTTGAATTTGCAGAATCAGATCAGTTTATGAAACTCACATTTGAGC
AAATTAACGAACTTCTTATAGATGATGACTTACAGTTGCCTTCTGAAATAGTAGCATTCC
AGATTGCAATGAAATGGTTAGAATCTGACCAAAAGAGAGTGAAATACGCTGCCGATCTTT
TGAGCAATATTCGCTTTGGTACCATCTCTGCACAAGACCTGGTCAATTATGTTCAGTCAG
TACCAAGAATGATGCAAGATGCTGACTGTCACAAGCTTCTTGTAGATGCTATGAACTACC
ACTTACTTCCCTATCATCAAAACACGTTGCAGTCTAGACGCACGAGAATCCGAGGGGGCT
GTCGTGTCCTTGTCACTGTAGGGGGCCGTCCAGGCCTTACTGAGAAGTCCCTTAGTAGAG
ATGTTTTGTACAGAGACCCTGAATATGGATGGAGCAAACTTACAGAGATGCCAGCCAAGA
GTTTTAATCAGTGTGTGGCTGTGATGGATGGATTCCTTTATGTGGCAGGTGGTGAAGACC
AGAATGATGCAAGAAATCAAGCCAAGCATGCAGTCAGCAATTTCTGCAGATACGACCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-559, + strand, RNAz p=0.511284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, + strand, RNAz p=0.511284

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-593, gnl|bosTau2|chr23 (5194111-5194703)
               

               
               1-593, gnl|Hg17|chr6 (53627446-53626854)
               

               
               1-593, gnl|Mm7|chr9 (77689098-77689690)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-593, gnl|bosTau2|chr23 (5194111-5194703)
               

               
               1-593, gnl|Hg17|chr6 (53627446-53626854)
               

               
               1-593, gnl|Mm7|chr9 (77689098-77689690)

	1-593, gnl\|bosTau2\|chr23 (5194111-5194703)
	1-593, gnl\|Hg17\|chr6 (53627446-53626854)
	1-593, gnl\|Mm7\|chr9 (77689098-77689690)