Non-Coding RNA Search

Ss1.1-Mixn-0011p12.5

Sequence:


               
               CGAGTGGAAAAGTCCCCCCATGAACAGGAGATAAAATTCTTTGCCAAGATCCTGCTCCCT
TTGATCAACCAGTACTTCACCAACCACTGCCTCTATTTTCTGTCCACTCCGGCCAAAGTG
CTGGGAAGGCGGCGGCCACGCCTCCAACAAGGAGAAGGAAATGATCACCAGCCTCTTCTG
CAAGCTGGCCGCTCTTGTCCGTCACCGAGTCTCTCTCTTTGGGACGGATGCCCCAGCCGT
GGTCAACTGCCTTCACATCCTGGCACGTTCCCTGGACGCGAGGACAGTGATGAAGTCTGG
CCCCGAGATTGTGAAGGCCGGCCTCCGTTCCTTCTTCGAGAGCGCCTCGGAGGACATCGA
GAAGATGGTGGAGAACCTGCGCCTGGGCAAGGTGTCACAGGCGCGCACGCAGGTCAAGGG
CGTGGGCCAGAACCTCACCTACACCACCGTGGCCCTGCTGCCTGTGCTAACCACCCTCTT
CCAGCACATCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTGGAAAAGTCCCCCCATGAACAGGAGATAAAATTCTTTGCCAAGATCCTGCTCCCT
TTGATCAACCAGTACTTCACCAACCACTGCCTCTATTTTCTGTCCACTCCGGCCAAAGTG
CTGGGAAGGCGGCGGCCACGCCTCCAACAAGGAGAAGGAAATGATCACCAGCCTCTTCTG
CAAGCTGGCCGCTCTTGTCCGTCACCGAGTCTCTCTCTTTGGGACGGATGCCCCAGCCGT
GGTCAACTGCCTTCACATCCTGGCACGTTCCCTGGACGCGAGGACAGTGATGAAGTCTGG
CCCCGAGATTGTGAAGGCCGGCCTCCGTTCCTTCTTCGAGAGCGCCTCGGAGGACATCGA
GAAGATGGTGGAGAACCTGCGCCTGGGCAAGGTGTCACAGGCGCGCACGCAGGTCAAGGG
CGTGGGCCAGAACCTCACCTACACCACCGTGGCCCTGCTGCCTGTGCTAACCACCCTCTT
CCAGCACATCGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-171, + strand, RNAz p=0.821584
               

               
               360-479, - strand, RNAz p=0.982568

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-171, + strand, RNAz p=0.821584
               

               
               360-479, - strand, RNAz p=0.982568

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               360-479, AV593262 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV593262.1|), blast E-value=2.00386e-43, identity=94.17% 
               

               
               360-479, AMGNNUC (gb|CB547517.1|), blast E-value=3e-36, identity=91.67%
               

               
               360-479, LIB4216-024-R1-K1-F6 LIB4216 Canis familiaris cDNA clone 
(gb|DN420889.1|), blast E-value=4.00001e-41, identity=93.33% 
               

               
               360-462, LIB4216-096-R1-K1-B7 LIB4216 Canis familiaris cDNA clone 
(gb|DN427674.1|), blast E-value=4e-38, identity=95.15% 
               

               
               360-479, LB03038.CR_O01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373594.1|), 
blast E-value=2.00386e-43, identity=94.17% 
               

               
               360-479, LB03039.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377036.1|), 
blast E-value=2.00386e-43, identity=94.17%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               360-479, AV593262 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV593262.1|), blast E-value=2.00386e-43, identity=94.17% 
               

               
               360-479, AMGNNUC (gb|CB547517.1|), blast E-value=3e-36, identity=91.67%
               

               
               360-479, LIB4216-024-R1-K1-F6 LIB4216 Canis familiaris cDNA clone 
(gb|DN420889.1|), blast E-value=4.00001e-41, identity=93.33% 
               

               
               360-462, LIB4216-096-R1-K1-B7 LIB4216 Canis familiaris cDNA clone 
(gb|DN427674.1|), blast E-value=4e-38, identity=95.15% 
               

               
               360-479, LB03038.CR_O01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE373594.1|), 
blast E-value=2.00386e-43, identity=94.17% 
               

               
               360-479, LB03039.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE377036.1|), 
blast E-value=2.00386e-43, identity=94.17%

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               44-171, gnl|bosTau2|chr18 (44451031-44451157)
               

               
               44-171, gnl|canFam2|chr1 (117431477-117431342)
               

               
               44-171, gnl|danRer3|chr10 (28968917-28968787)
               

               
               44-171, gnl|dasNov1|scaffold_2467 (44423-44290)
               

               
               44-171, gnl|echTel1|scaffold_324376 (10150-10015)
               

               
               44-171, gnl|fr1|chrUn (97557988-97558118)
               

               
               44-171, gnl|galGal2|chr5 (27109991-27109861)
               

               
               44-171, gnl|hg17|chr19 (43693134-43693269)
               

               
               44-171, gnl|Hg17|chr19 (43693135-43693261)
               

               
               44-171, gnl|loxAfr1|scaffold_1470 (4402-4267)
               

               
               44-171, gnl|mm7|chr7 (26002053-26001918)
               

               
               44-171, gnl|Mm7|chr7 (26002050-26001924)
               

               
               44-171, gnl|oryCun1|scaffold_208207 (53-188)
               

               
               44-171, gnl|panTro1|chr20 (40602324-40602459)
               

               
               44-171, gnl|rheMac2|chr19 (44849037-44849172)
               

               
               44-171, gnl|rn3|chr1 (84265861-84265726)
               

               
               44-171, gnl|tetNig1|chr16 (6200044-6200177)
               

               
               44-171, gnl|xenTro1|scaffold_572 (624124-624252)
               


               
               281-492, gnl|bosTau2|chr18 (44452269-44452480)
               

               
               281-492, gnl|Hg17|chr19 (43694723-43694934)
               

               
               281-492, gnl|Mm7|chr7 (26000098-25999887)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-171, gnl|bosTau2|chr18 (44451031-44451157)
               

               
               44-171, gnl|canFam2|chr1 (117431477-117431342)
               

               
               44-171, gnl|danRer3|chr10 (28968917-28968787)
               

               
               44-171, gnl|dasNov1|scaffold_2467 (44423-44290)
               

               
               44-171, gnl|echTel1|scaffold_324376 (10150-10015)
               

               
               44-171, gnl|fr1|chrUn (97557988-97558118)
               

               
               44-171, gnl|galGal2|chr5 (27109991-27109861)
               

               
               44-171, gnl|hg17|chr19 (43693134-43693269)
               

               
               44-171, gnl|Hg17|chr19 (43693135-43693261)
               

               
               44-171, gnl|loxAfr1|scaffold_1470 (4402-4267)
               

               
               44-171, gnl|mm7|chr7 (26002053-26001918)
               

               
               44-171, gnl|Mm7|chr7 (26002050-26001924)
               

               
               44-171, gnl|oryCun1|scaffold_208207 (53-188)
               

               
               44-171, gnl|panTro1|chr20 (40602324-40602459)
               

               
               44-171, gnl|rheMac2|chr19 (44849037-44849172)
               

               
               44-171, gnl|rn3|chr1 (84265861-84265726)
               

               
               44-171, gnl|tetNig1|chr16 (6200044-6200177)
               

               
               44-171, gnl|xenTro1|scaffold_572 (624124-624252)
               


               
               281-492, gnl|bosTau2|chr18 (44452269-44452480)
               

               
               281-492, gnl|Hg17|chr19 (43694723-43694934)
               

               
               281-492, gnl|Mm7|chr7 (26000098-25999887)

	44-171, + strand, RNAz p=0.821584
	360-479, - strand, RNAz p=0.982568

	360-479, AV593262 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj\|AV593262.1\|), blast E-value=2.00386e-43, identity=94.17%
	360-479, AMGNNUC (gb\|CB547517.1\|), blast E-value=3e-36, identity=91.67%
	360-479, LIB4216-024-R1-K1-F6 LIB4216 Canis familiaris cDNA clone (gb\|DN420889.1\|), blast E-value=4.00001e-41, identity=93.33%
	360-462, LIB4216-096-R1-K1-B7 LIB4216 Canis familiaris cDNA clone (gb\|DN427674.1\|), blast E-value=4e-38, identity=95.15%
	360-479, LB03038.CR_O01 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE373594.1\|), blast E-value=2.00386e-43, identity=94.17%
	360-479, LB03039.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE377036.1\|), blast E-value=2.00386e-43, identity=94.17%

	44-171, gnl\|bosTau2\|chr18 (44451031-44451157)
	44-171, gnl\|canFam2\|chr1 (117431477-117431342)
	44-171, gnl\|danRer3\|chr10 (28968917-28968787)
	44-171, gnl\|dasNov1\|scaffold_2467 (44423-44290)
	44-171, gnl\|echTel1\|scaffold_324376 (10150-10015)
	44-171, gnl\|fr1\|chrUn (97557988-97558118)
	44-171, gnl\|galGal2\|chr5 (27109991-27109861)
	44-171, gnl\|hg17\|chr19 (43693134-43693269)
	44-171, gnl\|Hg17\|chr19 (43693135-43693261)
	44-171, gnl\|loxAfr1\|scaffold_1470 (4402-4267)
	44-171, gnl\|mm7\|chr7 (26002053-26001918)
	44-171, gnl\|Mm7\|chr7 (26002050-26001924)
	44-171, gnl\|oryCun1\|scaffold_208207 (53-188)
	44-171, gnl\|panTro1\|chr20 (40602324-40602459)
	44-171, gnl\|rheMac2\|chr19 (44849037-44849172)
	44-171, gnl\|rn3\|chr1 (84265861-84265726)
	44-171, gnl\|tetNig1\|chr16 (6200044-6200177)
	44-171, gnl\|xenTro1\|scaffold_572 (624124-624252)

	281-492, gnl\|bosTau2\|chr18 (44452269-44452480)
	281-492, gnl\|Hg17\|chr19 (43694723-43694934)
	281-492, gnl\|Mm7\|chr7 (26000098-25999887)