Non-Coding RNA Search

Ss1.1-Mixn-0012d03.5

Sequence:


               
               CCATGTTCTATGACGAGGATGGGGATCTGGCTCACGAGTTCTATGAGGAGACAATCATCA
CCAAGAACGGGCAGAAGCGGGCCAAGCTGAGGCGGGTGCATAAGAACCTGATTCCTCAGG
GCATCGTGAAGCTGGATCCCCCCCGCATCCACGTGGATTTCCCTGTGATCCTCTATGAGG
TGTGAGCCTGGGAGGTGGCAGGCATAAGCACCCCCTGCCCCAGCAAGAAACCCCCAGGCA
CAAGGTGTGGCTTCCATTGAGGAACCTAGGCTGGGGCCACAACCCTGAATAAACTCCACT
GGCCTGGAACCTTCAGCTGTGAGCAGGGCAGTCCTACAATGTTGGTTGGGTGTTGGTTTG
TATATGGACAAGAAGTGGCTGATGGCTGGCGAGGGCTGATGGCGGAGTTAGCAGCCCACC
TTTCCCAGCAATCCCTACGAGGAGCATGGCAGGGCATATGCTGGTCAGGAAGGCCAGGTT
CCTGTGCCCTTGCCTGGCCTGCCTTCTTCCACGCTTGCCTAGGGCCCAGCCCTGATAGAG
GCTACAGCACTTTACAAGCAAGGTCTGCCTTCTTCCAGCCCCAGGGCTGTGGGAGCTGTA
CACAAGTGGGAACTTCCTTTCCCTCACTTCCTTTACCCTCTCGTTGGAGCATTTCAGCCG
TTTGCTACCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGTTCTATGACGAGGATGGGGATCTGGCTCACGAGTTCTATGAGGAGACAATCATCA
CCAAGAACGGGCAGAAGCGGGCCAAGCTGAGGCGGGTGCATAAGAACCTGATTCCTCAGG
GCATCGTGAAGCTGGATCCCCCCCGCATCCACGTGGATTTCCCTGTGATCCTCTATGAGG
TGTGAGCCTGGGAGGTGGCAGGCATAAGCACCCCCTGCCCCAGCAAGAAACCCCCAGGCA
CAAGGTGTGGCTTCCATTGAGGAACCTAGGCTGGGGCCACAACCCTGAATAAACTCCACT
GGCCTGGAACCTTCAGCTGTGAGCAGGGCAGTCCTACAATGTTGGTTGGGTGTTGGTTTG
TATATGGACAAGAAGTGGCTGATGGCTGGCGAGGGCTGATGGCGGAGTTAGCAGCCCACC
TTTCCCAGCAATCCCTACGAGGAGCATGGCAGGGCATATGCTGGTCAGGAAGGCCAGGTT
CCTGTGCCCTTGCCTGGCCTGCCTTCTTCCACGCTTGCCTAGGGCCCAGCCCTGATAGAG
GCTACAGCACTTTACAAGCAAGGTCTGCCTTCTTCCAGCCCCAGGGCTGTGGGAGCTGTA
CACAAGTGGGAACTTCCTTTCCCTCACTTCCTTTACCCTCTCGTTGGAGCATTTCAGCCG
TTTGCTACCTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52858448|gb|AAU89135.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52858448|gb|AAU89135.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               156-267, - strand, RNAz p=0.925085
               

               
               383-672, - strand, RNAz p=0.969876

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-267, - strand, RNAz p=0.925085
               

               
               383-672, - strand, RNAz p=0.969876

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-672, gnl|bosTau2|chr22 (38605219-38604664)
               

               
               117-672, gnl|Hg17|chr3 (50338624-50338063)
               

               
               117-672, gnl|Mm7|chr9 (107294292-107294857)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-672, gnl|bosTau2|chr22 (38605219-38604664)
               

               
               117-672, gnl|Hg17|chr3 (50338624-50338063)
               

               
               117-672, gnl|Mm7|chr9 (107294292-107294857)

	156-267, - strand, RNAz p=0.925085
	383-672, - strand, RNAz p=0.969876

	117-672, gnl\|bosTau2\|chr22 (38605219-38604664)
	117-672, gnl\|Hg17\|chr3 (50338624-50338063)
	117-672, gnl\|Mm7\|chr9 (107294292-107294857)