Non-Coding RNA Search

Ss1.1-Mixn-0012m03.5

Sequence:


               
               CAAGGCAAGCATCCGGAATGGTGGGGAGAATGTGGCAGCTGTACTGAAGGCCCATGGTGT
GAAGTTTCTTTTCACACTGGTTGGTGGGCACATTTCCCCACTGCTGGTGGCCTGTGAGAA
GCTGGGCATTCGTGTGGTGGACACCCGCCAAGAAGTCACGGCCGTCTTTGCTGCCGATGC
TGTGGCCCGCCTGACTGGGTCTGTGGGTGTGGCGGCAGTGACGGCAGGCCCTGGCCTTAC
CAACACAGTGACTGCGGTGAAGAACGCCCAGATAGCCCAGTCCCCGATCCTGCTTCTGGG
TGGGGCTGCCAGTACCCTGCTGCAGAACCGGGGTGCACTCCAGGCTGTCGATCAGATGTC
CCTGTTCCAGCCACTCTGCAAGTTTTGTGCTTCTGTGCGAAGGGTGAGAGATATCATCCC
CACCCTGAGGGCTGCGATGGCTGCTGCTCAGTCGGGCACCCCTGGCCCAGTGTTTGTGGA
ACTGCCTGTTGACGTGCTGTACCCCTATTTCATGGTTCAGAAGGAGATGGTGCCAGCTAA
GCCACCCAAGGGCCTCGTGGGTCGAGGAGTCTCCTGGTACTTAGAAAATCACCTGGCTAA
CCTCTTTGCAGGAGCCTGGGAGCCTCGGCCTGAGGGGCCTCTGCCTCTGGACATCCCCCA
GGCTTCCCCTGAGAAGGTTCAGCGCTGTGTGGAGATCTTGAGCCGGGCCAAAAGGCCCCT
TATGCTCCTCGGGAGCCAGGCCCTGCTGCCCCCAACACCCGCAGACAAACTTAGGGTTGC
CGTGGAGACCCTGGGTGTCCCCTGCTTCCTGGGGGGGATGGCTCGGGGACTGCTGGGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGCAAGCATCCGGAATGGTGGGGAGAATGTGGCAGCTGTACTGAAGGCCCATGGTGT
GAAGTTTCTTTTCACACTGGTTGGTGGGCACATTTCCCCACTGCTGGTGGCCTGTGAGAA
GCTGGGCATTCGTGTGGTGGACACCCGCCAAGAAGTCACGGCCGTCTTTGCTGCCGATGC
TGTGGCCCGCCTGACTGGGTCTGTGGGTGTGGCGGCAGTGACGGCAGGCCCTGGCCTTAC
CAACACAGTGACTGCGGTGAAGAACGCCCAGATAGCCCAGTCCCCGATCCTGCTTCTGGG
TGGGGCTGCCAGTACCCTGCTGCAGAACCGGGGTGCACTCCAGGCTGTCGATCAGATGTC
CCTGTTCCAGCCACTCTGCAAGTTTTGTGCTTCTGTGCGAAGGGTGAGAGATATCATCCC
CACCCTGAGGGCTGCGATGGCTGCTGCTCAGTCGGGCACCCCTGGCCCAGTGTTTGTGGA
ACTGCCTGTTGACGTGCTGTACCCCTATTTCATGGTTCAGAAGGAGATGGTGCCAGCTAA
GCCACCCAAGGGCCTCGTGGGTCGAGGAGTCTCCTGGTACTTAGAAAATCACCTGGCTAA
CCTCTTTGCAGGAGCCTGGGAGCCTCGGCCTGAGGGGCCTCTGCCTCTGGACATCCCCCA
GGCTTCCCCTGAGAAGGTTCAGCGCTGTGTGGAGATCTTGAGCCGGGCCAAAAGGCCCCT
TATGCTCCTCGGGAGCCAGGCCCTGCTGCCCCCAACACCCGCAGACAAACTTAGGGTTGC
CGTGGAGACCCTGGGTGTCCCCTGCTTCCTGGGGGGGATGGCTCGGGGACTGCTGGGTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62087710|dbj|BAD92302.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62087710|dbj|BAD92302.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-803, - strand, RNAz p=0.836201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-803, - strand, RNAz p=0.836201

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-840, gnl|bosTau2|chr7 (7120605-7119766)
               

               
               1-840, gnl|Hg17|chr19 (15095382-15091048)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr7 (7120605-7119766)
               

               
               1-840, gnl|Hg17|chr19 (15095382-15091048)

	1-840, gnl\|bosTau2\|chr7 (7120605-7119766)
	1-840, gnl\|Hg17\|chr19 (15095382-15091048)