Non-Coding RNA Search

Ss1.1-Mixn-0013m07.5

Sequence:


               
               CCAGACCTACCTTCTTTGCCCGGAAGTTTGAGTCGACTGTGAACCAGGAGGTACTGGAAA
TCCTGGACTTCCACCTCTATGGCAGCTACCCCCCCGGCACCCCAGCCCTCAAGGCCTACT
GGGAGAACACCTACGATGTGGCCGATGGTCCCAGTGGGCTCAGTGATGTCATGCTCACTG
CTTACACCGCTTTTGTCCGCCTCAGCCTACGCCATGTCGCCACCGCTGCATCCCCACTGG
CCGACCCCCTCTGCAGGTTTGAGCCCAAGGGCTTGCCGTCCAGCGTGCACCTGTATTTCT
ATGACGACCATTTCCAGGGCTACCTGGTGACGCAGGCGGTGCAGCCCTCAGCCCAGGGGC
CGGCAGAGACGCTTGAGATGTGGCTGATGCCCCAGGGGTCGCTGAAGCTGTTGGGGCGCA
GTGACCAGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGACCTACCTTCTTTGCCCGGAAGTTTGAGTCGACTGTGAACCAGGAGGTACTGGAAA
TCCTGGACTTCCACCTCTATGGCAGCTACCCCCCCGGCACCCCAGCCCTCAAGGCCTACT
GGGAGAACACCTACGATGTGGCCGATGGTCCCAGTGGGCTCAGTGATGTCATGCTCACTG
CTTACACCGCTTTTGTCCGCCTCAGCCTACGCCATGTCGCCACCGCTGCATCCCCACTGG
CCGACCCCCTCTGCAGGTTTGAGCCCAAGGGCTTGCCGTCCAGCGTGCACCTGTATTTCT
ATGACGACCATTTCCAGGGCTACCTGGTGACGCAGGCGGTGCAGCCCTCAGCCCAGGGGC
CGGCAGAGACGCTTGAGATGTGGCTGATGCCCCAGGGGTCGCTGAAGCTGTTGGGGCGCA
GTGACCAGGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-239, + strand, RNAz p=0.955556

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, + strand, RNAz p=0.955556

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               114-248, - strand, RNAmicro p=0.97008

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               114-248, - strand, RNAmicro p=0.97008

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-258, gnl|bosTau2|chr19 (29034302-29034045)
               

               
               1-258, gnl|canFam2|chr9 (29650600-29650840)
               

               
               1-258, gnl|danRer3|chr3 (18782519-18782280)
               

               
               1-258, gnl|dasNov1|scaffold_5186 (89164-89406)
               

               
               1-258, gnl|echTel1|scaffold_246053 (4221-4464)
               

               
               1-258, gnl|fr1|chrUn (94471909-94472148)
               

               
               1-258, gnl|galGal2|chr3_random (1107199-1107018)
               

               
               1-258, gnl|hg17|chr17 (45788869-45789109)
               

               
               1-258, gnl|Hg17|chr17 (45788878-45789135)
               

               
               1-258, gnl|loxAfr1|scaffold_11823 (8964-8724)
               

               
               1-258, gnl|mm7|chr11 (94776889-94776649)
               

               
               1-258, gnl|Mm7|chr11 (94776878-94776621)
               

               
               1-258, gnl|monDom2|scaffold_230 (80440-80680)
               

               
               1-258, gnl|oryCun1|scaffold_188885 (18503-18742)
               

               
               1-258, gnl|panTro1|chr19_random (31425960-31426200)
               

               
               1-258, gnl|rheMac2|chr16 (34602768-34603008)
               

               
               1-258, gnl|rn3|chr10 (83316233-83315996)
               

               
               1-258, gnl|tetNig1|chrUn_random (39499306-39499067)
               

               
               1-258, gnl|xenTro1|scaffold_485 (692654-692421)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-258, gnl|bosTau2|chr19 (29034302-29034045)
               

               
               1-258, gnl|canFam2|chr9 (29650600-29650840)
               

               
               1-258, gnl|danRer3|chr3 (18782519-18782280)
               

               
               1-258, gnl|dasNov1|scaffold_5186 (89164-89406)
               

               
               1-258, gnl|echTel1|scaffold_246053 (4221-4464)
               

               
               1-258, gnl|fr1|chrUn (94471909-94472148)
               

               
               1-258, gnl|galGal2|chr3_random (1107199-1107018)
               

               
               1-258, gnl|hg17|chr17 (45788869-45789109)
               

               
               1-258, gnl|Hg17|chr17 (45788878-45789135)
               

               
               1-258, gnl|loxAfr1|scaffold_11823 (8964-8724)
               

               
               1-258, gnl|mm7|chr11 (94776889-94776649)
               

               
               1-258, gnl|Mm7|chr11 (94776878-94776621)
               

               
               1-258, gnl|monDom2|scaffold_230 (80440-80680)
               

               
               1-258, gnl|oryCun1|scaffold_188885 (18503-18742)
               

               
               1-258, gnl|panTro1|chr19_random (31425960-31426200)
               

               
               1-258, gnl|rheMac2|chr16 (34602768-34603008)
               

               
               1-258, gnl|rn3|chr10 (83316233-83315996)
               

               
               1-258, gnl|tetNig1|chrUn_random (39499306-39499067)
               

               
               1-258, gnl|xenTro1|scaffold_485 (692654-692421)

	1-258, gnl\|bosTau2\|chr19 (29034302-29034045)
	1-258, gnl\|canFam2\|chr9 (29650600-29650840)
	1-258, gnl\|danRer3\|chr3 (18782519-18782280)
	1-258, gnl\|dasNov1\|scaffold_5186 (89164-89406)
	1-258, gnl\|echTel1\|scaffold_246053 (4221-4464)
	1-258, gnl\|fr1\|chrUn (94471909-94472148)
	1-258, gnl\|galGal2\|chr3_random (1107199-1107018)
	1-258, gnl\|hg17\|chr17 (45788869-45789109)
	1-258, gnl\|Hg17\|chr17 (45788878-45789135)
	1-258, gnl\|loxAfr1\|scaffold_11823 (8964-8724)
	1-258, gnl\|mm7\|chr11 (94776889-94776649)
	1-258, gnl\|Mm7\|chr11 (94776878-94776621)
	1-258, gnl\|monDom2\|scaffold_230 (80440-80680)
	1-258, gnl\|oryCun1\|scaffold_188885 (18503-18742)
	1-258, gnl\|panTro1\|chr19_random (31425960-31426200)
	1-258, gnl\|rheMac2\|chr16 (34602768-34603008)
	1-258, gnl\|rn3\|chr10 (83316233-83315996)
	1-258, gnl\|tetNig1\|chrUn_random (39499306-39499067)
	1-258, gnl\|xenTro1\|scaffold_485 (692654-692421)