Non-Coding RNA Search

Ss1.1-Mixn-0014b06.5

Sequence:


               
               GGAGCGGCCGGCCCGCGTGGGCCAGTGGGTGCTGCTCTTCCTGGGCGTCACCCTGCTGGT
GGCCACCATGGGCCTCACCCAGCGGCTCTTCAGCATCCGCCACCAGATCCTCCGCCGGAC
TCACCGCGGGCCCCAGTTCGGCTCCGAGGTTGAGCTGAGACACTCCTGAGATGAGTGGTC
GGGCGGGCCTGCGGGGGGGAACGGGGACAGGGCCACAGAGAGACGGGGAAGGGGGCCGCC
TCCCCCAGCCCTCCTCTCCCTCCCCCATGCTGCCCCCCCCCAGTCCTCAGGACCATGAAC
CGCTGCGGCCCCTGCCCCTTGGTCCCCGGGGACCCGGCCACCTCACATGGAGCCCCCTCC
CTGTCTCTCTGTGAATTCAATTAAAGGTCCTGTTCCTCTGTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGGCCGGCCCGCGTGGGCCAGTGGGTGCTGCTCTTCCTGGGCGTCACCCTGCTGGT
GGCCACCATGGGCCTCACCCAGCGGCTCTTCAGCATCCGCCACCAGATCCTCCGCCGGAC
TCACCGCGGGCCCCAGTTCGGCTCCGAGGTTGAGCTGAGACACTCCTGAGATGAGTGGTC
GGGCGGGCCTGCGGGGGGGAACGGGGACAGGGCCACAGAGAGACGGGGAAGGGGGCCGCC
TCCCCCAGCCCTCCTCTCCCTCCCCCATGCTGCCCCCCCCCAGTCCTCAGGACCATGAAC
CGCTGCGGCCCCTGCCCCTTGGTCCCCGGGGACCCGGCCACCTCACATGGAGCCCCCTCC
CTGTCTCTCTGTGAATTCAATTAAAGGTCCTGTTCCTCTGTCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-222, + strand, RNAz p=0.878861
               

               
               280-392, - strand, RNAz p=0.800399

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-222, + strand, RNAz p=0.878861
               

               
               280-392, - strand, RNAz p=0.800399

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-392, gnl|bosTau2|chr19 (40243184-40243579)
               

               
               1-392, gnl|Hg17|chr17 (58928291-58928704)
               

               
               1-392, gnl|Mm7|chr11 (106097904-106098295)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr19 (40243184-40243579)
               

               
               1-392, gnl|Hg17|chr17 (58928291-58928704)
               

               
               1-392, gnl|Mm7|chr11 (106097904-106098295)

	1-222, + strand, RNAz p=0.878861
	280-392, - strand, RNAz p=0.800399

	1-392, gnl\|bosTau2\|chr19 (40243184-40243579)
	1-392, gnl\|Hg17\|chr17 (58928291-58928704)
	1-392, gnl\|Mm7\|chr11 (106097904-106098295)