Non-Coding RNA Search

Ss1.1-Mixn-0015f03.5

Sequence:


               
               CACGACTGGGCGGCCATCCGCCTGCGCAGCAGCGAGGTCTTCAAATGGCTCATCCCGGAC
AGCGCCGACACCACGGTGGGCAACTCTGACTGCGCCTACGACCGCATCGTTGTCTGTGGC
TCCCACCTGCGCAGGAGCCTGAAGCCCCAGTCGGCCGCCGTGCATGACTTCCAGGAGGAA
TTCAGCCTGGACCAGAGTCAGGCCCTTGCCATCAGTGACCATTTTCCTGTGGAGGTGACC
CTCAAGTCGCACTGAGCCCTGCGGTGCAAGCCCCATCGAGCCCTTCTGGGCAGCCAGCCA
AGCCCAGTGAGGCTGCAGGGTGGCATCGGCTGGCCTGGACAAACGACGGGACCCTTTGAG
CCCTTTGCCCGTCTGTGAAGCATGATGCCACCACCCACCTCGGGGGGTTGTGAGAAACAC
CTTGCAGAGCGCTGGGCACTCGGTAAACATGATCCAGCACAGGGAAGACCGTACCCAGCC
CAGCCACGTCGGTGCTGACACCTCCATGTCCTTTCTTAGGCCGCAGCCCTCTTGGGGCAC
AATTCTTGGTCCTGCAGCCCAGCAGGTTCCTGGCCCAAGTTCCCTTAGGGGACAGGGACA
GCCCGGTCTGCCCACTCCATGTCCTGCTGGGCACTGGCCACCTCCACACTAGGCTGGCTC
TAGAAGGCAGCCCCCGTGCTCACGTGCGTGGAGTGCTAATGCCCAAGGCCCACCTCCCGG
ACCACGGGGCTCCTGCTCCAGCCTGATGCCCAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGACTGGGCGGCCATCCGCCTGCGCAGCAGCGAGGTCTTCAAATGGCTCATCCCGGAC
AGCGCCGACACCACGGTGGGCAACTCTGACTGCGCCTACGACCGCATCGTTGTCTGTGGC
TCCCACCTGCGCAGGAGCCTGAAGCCCCAGTCGGCCGCCGTGCATGACTTCCAGGAGGAA
TTCAGCCTGGACCAGAGTCAGGCCCTTGCCATCAGTGACCATTTTCCTGTGGAGGTGACC
CTCAAGTCGCACTGAGCCCTGCGGTGCAAGCCCCATCGAGCCCTTCTGGGCAGCCAGCCA
AGCCCAGTGAGGCTGCAGGGTGGCATCGGCTGGCCTGGACAAACGACGGGACCCTTTGAG
CCCTTTGCCCGTCTGTGAAGCATGATGCCACCACCCACCTCGGGGGGTTGTGAGAAACAC
CTTGCAGAGCGCTGGGCACTCGGTAAACATGATCCAGCACAGGGAAGACCGTACCCAGCC
CAGCCACGTCGGTGCTGACACCTCCATGTCCTTTCTTAGGCCGCAGCCCTCTTGGGGCAC
AATTCTTGGTCCTGCAGCCCAGCAGGTTCCTGGCCCAAGTTCCCTTAGGGGACAGGGACA
GCCCGGTCTGCCCACTCCATGTCCTGCTGGGCACTGGCCACCTCCACACTAGGCTGGCTC
TAGAAGGCAGCCCCCGTGCTCACGTGCGTGGAGTGCTAATGCCCAAGGCCCACCTCCCGG
ACCACGGGGCTCCTGCTCCAGCCTGATGCCCAGGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               494-653, - strand, RNAz p=0.968256

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               494-653, - strand, RNAz p=0.968256

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-203, gnl|bosTau2|chr25 (5031309-5031107)
               

               
               1-203, gnl|Hg17|chr16 (2227820-2228022)
               

               
               1-203, gnl|Mm7|chr17 (22622521-22622319)
               


               
               263-683, gnl|bosTau2|chr25 (5030667-5030241)
               

               
               263-683, gnl|Hg17|chr16 (2228466-2228847)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr25 (5031309-5031107)
               

               
               1-203, gnl|Hg17|chr16 (2227820-2228022)
               

               
               1-203, gnl|Mm7|chr17 (22622521-22622319)
               


               
               263-683, gnl|bosTau2|chr25 (5030667-5030241)
               

               
               263-683, gnl|Hg17|chr16 (2228466-2228847)

	1-203, gnl\|bosTau2\|chr25 (5031309-5031107)
	1-203, gnl\|Hg17\|chr16 (2227820-2228022)
	1-203, gnl\|Mm7\|chr17 (22622521-22622319)

	263-683, gnl\|bosTau2\|chr25 (5030667-5030241)
	263-683, gnl\|Hg17\|chr16 (2228466-2228847)