Non-Coding RNA Search

Ss1.1-Mixn-0016e12.5

Sequence:


               
               GTTCGACGACCTGTTTGAGAACATGCACAAGAGAAAGATGCTGCGCGCCAAGATCCGCGA
GCTGCAGCGCTACCGGCGCAACGGCATCACCAAGATGGAGGAGTCGGCCGAGTACGAGGC
GGCCCGGCACAAGCGGGAGAAGCGGAAGGAGAACCGGAACACGGGCGGCTCCAAGAGGGG
CAAGGAGGACGGCAAGGACGGCGAGTTCGCCGCCATCGAGCACCTGCCGGGCTTCGAGCT
CCTGTCGGACCGCGAGAAGGTGCTCTGCAGCTCCCTGAACCTGAGCCCGGCGCGCTACGT
GACGGTGAAGACCATCATCATCAAGGACCACCTGCAGAAGCGGCAGGGCGTCCCGGCCAA
GAGCCGCCTGCCCGGCTACCTGGACAAGGTGCTCAAGAAGCGCATCCTCAACTTCCTCAC
CGAGAGCGGCTGGATATCCAGGGACGCCTCCTGAAGCGCACCCCGCTTTGCGGGTGGAAC
CAGGCCGAGAGCTTGTGAGCCAAGACGACGGGGCGGGGGGGCGCCTTGGTCCCCGTCGTT
GCTCTTTTAAAACAGATTGCGTGTGCGGGGCGTCAGTTCTTCGTGTGGTCCCGAGGCAGC
AAGAGCCTCAGGCTGACGTGGGATCGCGGGGGAGCCAGACCCGCCTGCTGCACCTCGGCC
TAGAAGGAACACCCCAAGAGGGCGCTGTGCCGCCTCGCCTCCGGTTTGAGGACTGTGATG
ACGCTGGCGAATTTTCTTTGCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCGACGACCTGTTTGAGAACATGCACAAGAGAAAGATGCTGCGCGCCAAGATCCGCGA
GCTGCAGCGCTACCGGCGCAACGGCATCACCAAGATGGAGGAGTCGGCCGAGTACGAGGC
GGCCCGGCACAAGCGGGAGAAGCGGAAGGAGAACCGGAACACGGGCGGCTCCAAGAGGGG
CAAGGAGGACGGCAAGGACGGCGAGTTCGCCGCCATCGAGCACCTGCCGGGCTTCGAGCT
CCTGTCGGACCGCGAGAAGGTGCTCTGCAGCTCCCTGAACCTGAGCCCGGCGCGCTACGT
GACGGTGAAGACCATCATCATCAAGGACCACCTGCAGAAGCGGCAGGGCGTCCCGGCCAA
GAGCCGCCTGCCCGGCTACCTGGACAAGGTGCTCAAGAAGCGCATCCTCAACTTCCTCAC
CGAGAGCGGCTGGATATCCAGGGACGCCTCCTGAAGCGCACCCCGCTTTGCGGGTGGAAC
CAGGCCGAGAGCTTGTGAGCCAAGACGACGGGGCGGGGGGGCGCCTTGGTCCCCGTCGTT
GCTCTTTTAAAACAGATTGCGTGTGCGGGGCGTCAGTTCTTCGTGTGGTCCCGAGGCAGC
AAGAGCCTCAGGCTGACGTGGGATCGCGGGGGAGCCAGACCCGCCTGCTGCACCTCGGCC
TAGAAGGAACACCCCAAGAGGGCGCTGTGCCGCCTCGCCTCCGGTTTGAGGACTGTGATG
ACGCTGGCGAATTTTCTTTGCGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61881115|ref|XP_593622.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61881115|ref|XP_593622.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-457, - strand, RNAz p=0.816752

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-457, - strand, RNAz p=0.816752

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-457, gnl|bosTau2|chr10 (56289640-56290071)
               

               
               1-457, gnl|Hg17|chr4 (7174400-7174855)
               

               
               1-457, gnl|Mm7|chr5 (35539051-35538595)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-457, gnl|bosTau2|chr10 (56289640-56290071)
               

               
               1-457, gnl|Hg17|chr4 (7174400-7174855)
               

               
               1-457, gnl|Mm7|chr5 (35539051-35538595)

	1-457, gnl\|bosTau2\|chr10 (56289640-56290071)
	1-457, gnl\|Hg17\|chr4 (7174400-7174855)
	1-457, gnl\|Mm7\|chr5 (35539051-35538595)