Ss1.1-Mixn-0016n12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACAGCGCATCTCTCAGACCCATCCCCTGCTCATCAGCTCCAAGCACCAAAGAGGCAGA GGGCTGACGCGGCTGCAGGAGGCAGTGCCAGGACTTCTGCTGCCAGGGAGAGACGGAGCC TGTGGCTGGTGAGGCTGCCGAGCAGGGCCAGGCCGGGCCCTGCCCGCAAGGACGCCCAAG CCCTTCGCCGGCCCCTGTGCCCGGGAGCCCACCAGGCTCTCCGGCCGGCCCCACCATGAC TTCGGAGCCCACGCCGCCCCCGGTCGTGCCCCCACTCCACTCTCCCAAGTCCCCTGTCTG GCCCACCTTCCCCTTCCACCGGGAGGGCAGCAGGGTCTGGGAGCGAGGCGGTGTCTCATC TCGCGACCTGCCCAGTCCCCTGCCCACCAAACGGACCAGGACATACTCAGCGACAGCCCG AGCCTCGGCTGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCACGCTCACAGGGCCA TGGCTTCATCACGCCCGAGAACGGGTCGGAGGACATCTTCGTGCACGTTTCTGACATCGA GGGGGAGTACGTGCCAGTGGAAGGCGATGAGGTGACCTACAAGATGTGCCCCATCCCGCC CAAGAACCAGAAGTTCCAAGCCGTGGAGGTGGTGCTCACCCAGCTGGCCCCACACACTCC CCACGAGACGTGGTCCGGCCAGGTCGTGGGCTCCTAGGCCGGGTGGCTCACGGGGCGGCC GGTGCGGGTGGGGGTGGGGGGAGCCACACAGGGTAGCCGAGCAGCGGCCAGCGCCATGCC CCACCGCCCTGGCTGACCGGTCCCCGGGCGGCCTCGGTGTCTGTCTGTCCATCTGTGCTT GTGGACGTGTGTGCCTCCCCCCGCACCCTGTGACCGTCGTGTGAGCTGGACCGAGGGGGA GGCCACCAGACCTGCCTTCTCTGCTTATCCACTGTCTCCCCTCCCCTGTCCCCCCCCAAC GCCTGTCCACGTGTCCACGGAGCCTGAGGGGCTGTGCCAGGCCAGGGGCTGGGATTGCCC AGACAAGCCGCTCCCGCTGCCCCTGCCCCAGGCCTGGCTCGGGGGCCAGACTCTGCTTGT GCTACTCACACCTCCACCCCGGGCTGGGGTCTCCTGCGACCTGGATCCTTCCCCTCAGAA GCCAAGCCAGTGAGTGCTTTGGGGGGAGCCCCCCNACCTCTTTCGGGGCCCCCTGACCCC GCTGCCAAGGCCCAGCCTTCCTTCCTGCTCTTCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACAGCGCATCTCTCAGACCCATCCCCTGCTCATCAGCTCCAAGCACCAAAGAGGCAGA GGGCTGACGCGGCTGCAGGAGGCAGTGCCAGGACTTCTGCTGCCAGGGAGAGACGGAGCC TGTGGCTGGTGAGGCTGCCGAGCAGGGCCAGGCCGGGCCCTGCCCGCAAGGACGCCCAAG CCCTTCGCCGGCCCCTGTGCCCGGGAGCCCACCAGGCTCTCCGGCCGGCCCCACCATGAC TTCGGAGCCCACGCCGCCCCCGGTCGTGCCCCCACTCCACTCTCCCAAGTCCCCTGTCTG GCCCACCTTCCCCTTCCACCGGGAGGGCAGCAGGGTCTGGGAGCGAGGCGGTGTCTCATC TCGCGACCTGCCCAGTCCCCTGCCCACCAAACGGACCAGGACATACTCAGCGACAGCCCG AGCCTCGGCTGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCACGCTCACAGGGCCA TGGCTTCATCACGCCCGAGAACGGGTCGGAGGACATCTTCGTGCACGTTTCTGACATCGA GGGGGAGTACGTGCCAGTGGAAGGCGATGAGGTGACCTACAAGATGTGCCCCATCCCGCC CAAGAACCAGAAGTTCCAAGCCGTGGAGGTGGTGCTCACCCAGCTGGCCCCACACACTCC CCACGAGACGTGGTCCGGCCAGGTCGTGGGCTCCTAGGCCGGGTGGCTCACGGGGCGGCC GGTGCGGGTGGGGGTGGGGGGAGCCACACAGGGTAGCCGAGCAGCGGCCAGCGCCATGCC CCACCGCCCTGGCTGACCGGTCCCCGGGCGGCCTCGGTGTCTGTCTGTCCATCTGTGCTT GTGGACGTGTGTGCCTCCCCCCGCACCCTGTGACCGTCGTGTGAGCTGGACCGAGGGGGA GGCCACCAGACCTGCCTTCTCTGCTTATCCACTGTCTCCCCTCCCCTGTCCCCCCCCAAC GCCTGTCCACGTGTCCACGGAGCCTGAGGGGCTGTGCCAGGCCAGGGGCTGGGATTGCCC AGACAAGCCGCTCCCGCTGCCCCTGCCCCAGGCCTGGCTCGGGGGCCAGACTCTGCTTGT GCTACTCACACCTCCACCCCGGGCTGGGGTCTCCTGCGACCTGGATCCTTCCCCTCAGAA GCCAAGCCAGTGAGTGCTTTGGGGGGAGCCCCCCNACCTCTTTCGGGGCCCCCTGACCCC GCTGCCAAGGCCCAGCCTTCCTTCCTGCTCTTCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 190-424, - strand, RNAz p=0.761024 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 190-424, - strand, RNAz p=0.761024 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 111-437, gnl|bosTau2|chr5 (71326226-71325897) | |
| 111-437, gnl|Hg17|chr22 (40292345-40292672) | |
| 111-437, gnl|Mm7|chr15 (82031024-82031355) | |
| 535-956, gnl|bosTau2|chr5 (71324071-71323652) | |
| 535-956, gnl|Hg17|chr22 (40295237-40295676) | |
| 535-956, gnl|Mm7|chr15 (82033501-82033884) | |
| 539-698, gnl|bosTau2|chr25 (6579595-6579754) | |
| 539-698, gnl|canFam2|chr6 (36384204-36384035) | |
| 539-698, gnl|danRer3|chr3 (19785344-19785510) | |
| 539-698, gnl|dasNov1|scaffold_284435 (1308-1141) | |
| 539-698, gnl|echTel1|scaffold_194472 (2448-2279) | |
| 539-698, gnl|fr1|chrUn (30335238-30335070) | |
| 539-698, gnl|galGal2|chr14 (12222136-12221970) | |
| 539-698, gnl|hg17|chr16 (8856522-8856691) | |
| 539-698, gnl|Hg17|chr16 (8856680-8856521) | |
| 539-698, gnl|loxAfr1|scaffold_8161 (2073-1905) | |
| 539-698, gnl|mm7|chr16 (8334590-8334759) | |
| 539-698, gnl|Mm7|chr16 (8334748-8334589) | |
| 539-698, gnl|monDom2|scaffold_17 (37129280-37129111) | |
| 539-698, gnl|oryCun1|scaffold_102261 (871-702) | |
| 539-698, gnl|panTro1|chr18 (8987779-8987948) | |
| 539-698, gnl|rheMac2|chr20 (8990924-8991093) | |
| 539-698, gnl|rn3|chr10 (6997639-6997470) | |
| 539-698, gnl|tetNig1|chr2 (3211085-3210917) | |
| 539-698, gnl|xenTro1|scaffold_253 (1064699-1064866) | |
| 982-1188, gnl|bosTau2|chr5 (71323577-71323358) | |
| 982-1188, gnl|canFam2|chr10 (26772007-26771791) | |
| 982-1188, gnl|danRer3|chr1 (6533887-6533703) | |
| 982-1188, gnl|echTel1|scaffold_55827 (1339-1556) | |
| 982-1188, gnl|hg17|chr22 (40295650-40295854) | |
| 982-1188, gnl|Hg17|chr22 (40295739-40295928) | |
| 982-1188, gnl|loxAfr1|scaffold_75643 (6745-6530) | |
| 982-1188, gnl|mm7|chr15 (82033858-82034065) | |
| 982-1188, gnl|Mm7|chr15 (82033952-82034134) | |
| 982-1188, gnl|monDom2|scaffold_269 (134301-134540) | |
| 982-1188, gnl|oryCun1|scaffold_102261 (1078-1290) | |
| 982-1188, gnl|panTro1|chr23 (40563925-40564133) | |
| 982-1188, gnl|rheMac2|chr10 (85534309-85534501) | |
| 982-1188, gnl|rn3|chr7 (120356387-120356608) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-437, gnl|bosTau2|chr5 (71326226-71325897) | |
| 111-437, gnl|Hg17|chr22 (40292345-40292672) | |
| 111-437, gnl|Mm7|chr15 (82031024-82031355) | |
| 535-956, gnl|bosTau2|chr5 (71324071-71323652) | |
| 535-956, gnl|Hg17|chr22 (40295237-40295676) | |
| 535-956, gnl|Mm7|chr15 (82033501-82033884) | |
| 539-698, gnl|bosTau2|chr25 (6579595-6579754) | |
| 539-698, gnl|canFam2|chr6 (36384204-36384035) | |
| 539-698, gnl|danRer3|chr3 (19785344-19785510) | |
| 539-698, gnl|dasNov1|scaffold_284435 (1308-1141) | |
| 539-698, gnl|echTel1|scaffold_194472 (2448-2279) | |
| 539-698, gnl|fr1|chrUn (30335238-30335070) | |
| 539-698, gnl|galGal2|chr14 (12222136-12221970) | |
| 539-698, gnl|hg17|chr16 (8856522-8856691) | |
| 539-698, gnl|Hg17|chr16 (8856680-8856521) | |
| 539-698, gnl|loxAfr1|scaffold_8161 (2073-1905) | |
| 539-698, gnl|mm7|chr16 (8334590-8334759) | |
| 539-698, gnl|Mm7|chr16 (8334748-8334589) | |
| 539-698, gnl|monDom2|scaffold_17 (37129280-37129111) | |
| 539-698, gnl|oryCun1|scaffold_102261 (871-702) | |
| 539-698, gnl|panTro1|chr18 (8987779-8987948) | |
| 539-698, gnl|rheMac2|chr20 (8990924-8991093) | |
| 539-698, gnl|rn3|chr10 (6997639-6997470) | |
| 539-698, gnl|tetNig1|chr2 (3211085-3210917) | |
| 539-698, gnl|xenTro1|scaffold_253 (1064699-1064866) | |
| 982-1188, gnl|bosTau2|chr5 (71323577-71323358) | |
| 982-1188, gnl|canFam2|chr10 (26772007-26771791) | |
| 982-1188, gnl|danRer3|chr1 (6533887-6533703) | |
| 982-1188, gnl|echTel1|scaffold_55827 (1339-1556) | |
| 982-1188, gnl|hg17|chr22 (40295650-40295854) | |
| 982-1188, gnl|Hg17|chr22 (40295739-40295928) | |
| 982-1188, gnl|loxAfr1|scaffold_75643 (6745-6530) | |
| 982-1188, gnl|mm7|chr15 (82033858-82034065) | |
| 982-1188, gnl|Mm7|chr15 (82033952-82034134) | |
| 982-1188, gnl|monDom2|scaffold_269 (134301-134540) | |
| 982-1188, gnl|oryCun1|scaffold_102261 (1078-1290) | |
| 982-1188, gnl|panTro1|chr23 (40563925-40564133) | |
| 982-1188, gnl|rheMac2|chr10 (85534309-85534501) | |
| 982-1188, gnl|rn3|chr7 (120356387-120356608) |