Ss1.1-Mixn-0017k07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGACTTGATTCGGGGGGGGGGGTGCTCCTGGGACAAAGCAGAGTGGCTTCCACGCTC CTGGCCCGTCCTTCCCGCACCTCCAGGAGCCCAGGCGTCGTCCTCCCCCCCGCCCATGCG AGCTGTGGCCCGGCCCTCCAGTCCTGGGGGAGGCGGGAGGGCAGGCCCAAGCTCAGAATG AACCGAGTAGACTAAGGCACGGCAAGGCCCACAGAGTCATGAGCGCTCTTCCCGGGGTGG CCTCTGCTGAGGCTTCTGGCTGAGTGAGGGCTGCGGCTCCCGGGAGGGGAGGGACTCTGA GCAGCCACTGACCATCCAGAAGTAGTTTGGGTGCACCTGGCCCTGCACAGCCTCACTAAC CAACATTTCTCCGTCCACAGCAAACACACCCTTCCCGTCCTTGGGCTCCAGGCGGAAGGC AACCACCGGTACGTACACCAAGTGGGGACACTCACACTCCATGTGCCTGCCTTTCTCCAT GGCCAGGAAGAGGCGCAGCAGCATGGCCCGAGACACGCCAGCCCGCACATAGAACAGGTG CATGGCGCCGGCCGTGCAGCGGCCCATGGGTGCAGCGAACATCTCGCTGCCCAGGTGTGA GTGCAGCAGCGCCAGCACCAGCACAAAGTCCTGCTCCGGCACCACGGTCCAGTGGGAGGG CACCGGCTCCTCCAGGGGCACCAGGTGGGTGTCCACAGGGCCCTGCTGGGCCCACTGGGC CGGAGCGGAGGCGGGGGGCATCTTGGAGACCACCGTTTCTACAGGGAGGTAGGCCAGGCG ACCCCGGTAGGTGCGCAGGGTCACCAGGCGCAGGAAGGTGCCCAGAGTGAACCGCATCTC GCCCAGGCCCCGAAACTTCTCACTCTCCAGATCCACGTCCGCGATGAAACCCCATGTCAG GCTGAGCACGGAGAAGACGCGCAGCCCTGAGGCTGTCTGCAGGGACAGCAGATCCATGGG CGACAGCACCCGGCGACACAGCAGCCGTGTGCAGTTGGTCAGGAGGTCTTCATTCGTCAC CTGCTCGTAGCCGGCATAGTGGTTCAAAGAAGCTGCCAGTGCATTGCCAGAGCCGGCTGG GAGGCTACACAGGGGCTTCTGCATGGCGGTCTCCCAGTCCGGCCGCTCCATGAGCCCGTT CACCACCTCATGCATCAGCCCGTCTCCAGACATAATCACCAGCGCGTCCCAGAGTCTCAG GTCCTCCGCCCTCACCAGCTCCCGGGCGTGGTTCCGCCGGTCGGTGAGCATCAGCGTGAA GGAAATGTCGGCCTGGACCAGCAGGGGCTGCACGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGACTTGATTCGGGGGGGGGGGTGCTCCTGGGACAAAGCAGAGTGGCTTCCACGCTC CTGGCCCGTCCTTCCCGCACCTCCAGGAGCCCAGGCGTCGTCCTCCCCCCCGCCCATGCG AGCTGTGGCCCGGCCCTCCAGTCCTGGGGGAGGCGGGAGGGCAGGCCCAAGCTCAGAATG AACCGAGTAGACTAAGGCACGGCAAGGCCCACAGAGTCATGAGCGCTCTTCCCGGGGTGG CCTCTGCTGAGGCTTCTGGCTGAGTGAGGGCTGCGGCTCCCGGGAGGGGAGGGACTCTGA GCAGCCACTGACCATCCAGAAGTAGTTTGGGTGCACCTGGCCCTGCACAGCCTCACTAAC CAACATTTCTCCGTCCACAGCAAACACACCCTTCCCGTCCTTGGGCTCCAGGCGGAAGGC AACCACCGGTACGTACACCAAGTGGGGACACTCACACTCCATGTGCCTGCCTTTCTCCAT GGCCAGGAAGAGGCGCAGCAGCATGGCCCGAGACACGCCAGCCCGCACATAGAACAGGTG CATGGCGCCGGCCGTGCAGCGGCCCATGGGTGCAGCGAACATCTCGCTGCCCAGGTGTGA GTGCAGCAGCGCCAGCACCAGCACAAAGTCCTGCTCCGGCACCACGGTCCAGTGGGAGGG CACCGGCTCCTCCAGGGGCACCAGGTGGGTGTCCACAGGGCCCTGCTGGGCCCACTGGGC CGGAGCGGAGGCGGGGGGCATCTTGGAGACCACCGTTTCTACAGGGAGGTAGGCCAGGCG ACCCCGGTAGGTGCGCAGGGTCACCAGGCGCAGGAAGGTGCCCAGAGTGAACCGCATCTC GCCCAGGCCCCGAAACTTCTCACTCTCCAGATCCACGTCCGCGATGAAACCCCATGTCAG GCTGAGCACGGAGAAGACGCGCAGCCCTGAGGCTGTCTGCAGGGACAGCAGATCCATGGG CGACAGCACCCGGCGACACAGCAGCCGTGTGCAGTTGGTCAGGAGGTCTTCATTCGTCAC CTGCTCGTAGCCGGCATAGTGGTTCAAAGAAGCTGCCAGTGCATTGCCAGAGCCGGCTGG GAGGCTACACAGGGGCTTCTGCATGGCGGTCTCCCAGTCCGGCCGCTCCATGAGCCCGTT CACCACCTCATGCATCAGCCCGTCTCCAGACATAATCACCAGCGCGTCCCAGAGTCTCAG GTCCTCCGCCCTCACCAGCTCCCGGGCGTGGTTCCGCCGGTCGGTGAGCATCAGCGTGAA GGAAATGTCGGCCTGGACCAGCAGGGGCTGCACGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 561-680, + strand, RNAz p=0.796447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 561-680, + strand, RNAz p=0.796447 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 64-1036, gnl|bosTau2|chr19 (49278217-49279195) | |
| 64-1036, gnl|Hg17|chr17 (71895392-71894477) | |
| 64-1036, gnl|Mm7|chr11 (116645585-116644652) | |
| 329-687, gnl|bosTau2|chr18 (50549978-50550336) | |
| 329-687, gnl|Hg17|chr19 (53824787-53824429) | |
| 329-687, gnl|Mm7|chr7 (41887051-41887409) | |
| 762-1008, gnl|bosTau2|chr18 (50550747-50550993) | |
| 762-1008, gnl|canFam2|chr1 (110568688-110568411) | |
| 762-1008, gnl|danRer3|chrUn (95523415-95523723) | |
| 762-1008, gnl|echTel1|scaffold_200444 (6584-6295) | |
| 762-1008, gnl|fr1|chrUn (200882665-200883063) | |
| 762-1008, gnl|galGal2|chrUn (34017285-34017017) | |
| 762-1008, gnl|hg17|chr19 (53823775-53824052) | |
| 762-1008, gnl|Hg17|chr19 (53824018-53823772) | |
| 762-1008, gnl|loxAfr1|scaffold_20690 (59633-59910) | |
| 762-1008, gnl|mm7|chr7 (41888062-41887785) | |
| 762-1008, gnl|Mm7|chr7 (41887817-41888063) | |
| 762-1008, gnl|monDom2|scaffold_18 (34670540-34670813) | |
| 762-1008, gnl|oryCun1|scaffold_192657 (3846-4090) | |
| 762-1008, gnl|panTro1|chr20 (51205249-51205526) | |
| 762-1008, gnl|rheMac2|chr19 (54933247-54933524) | |
| 762-1008, gnl|rn3|chr1 (96258222-96257945) | |
| 762-1008, gnl|tetNig1|chr8 (8562372-8562019) | |
| 762-1008, gnl|xenTro1|scaffold_374 (82935-82679) | |
| 1144-1246, gnl|bosTau2|chr19 (49279636-49279738) | |
| 1144-1246, gnl|canFam2|chr9 (7311612-7311501) | |
| 1144-1246, gnl|danRer3|chrUn (95521394-95521504) | |
| 1144-1246, gnl|dasNov1|scaffold_109942 (117-228) | |
| 1144-1246, gnl|echTel1|scaffold_200444 (7247-7139) | |
| 1144-1246, gnl|fr1|chrUn (200882046-200882155) | |
| 1144-1246, gnl|hg17|chr17 (71893884-71893994) | |
| 1144-1246, gnl|Hg17|chr17 (71893994-71893892) | |
| 1144-1246, gnl|loxAfr1|scaffold_88594 (29802-29694) | |
| 1144-1246, gnl|mm7|chr11 (116644112-116644222) | |
| 1144-1246, gnl|Mm7|chr11 (116644222-116644122) | |
| 1144-1246, gnl|monDom2|scaffold_18 (34669898-34670008) | |
| 1144-1246, gnl|panTro1|chr19 (75258644-75258754) | |
| 1144-1246, gnl|rheMac2|chr16 (71742824-71742934) | |
| 1144-1246, gnl|rn3|chr10 (106658492-106658602) | |
| 1144-1246, gnl|tetNig1|chrUn_random (27274797-27274694) | |
| 1144-1246, gnl|xenTro1|scaffold_135 (1902472-1902359) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-1036, gnl|bosTau2|chr19 (49278217-49279195) | |
| 64-1036, gnl|Hg17|chr17 (71895392-71894477) | |
| 64-1036, gnl|Mm7|chr11 (116645585-116644652) | |
| 329-687, gnl|bosTau2|chr18 (50549978-50550336) | |
| 329-687, gnl|Hg17|chr19 (53824787-53824429) | |
| 329-687, gnl|Mm7|chr7 (41887051-41887409) | |
| 762-1008, gnl|bosTau2|chr18 (50550747-50550993) | |
| 762-1008, gnl|canFam2|chr1 (110568688-110568411) | |
| 762-1008, gnl|danRer3|chrUn (95523415-95523723) | |
| 762-1008, gnl|echTel1|scaffold_200444 (6584-6295) | |
| 762-1008, gnl|fr1|chrUn (200882665-200883063) | |
| 762-1008, gnl|galGal2|chrUn (34017285-34017017) | |
| 762-1008, gnl|hg17|chr19 (53823775-53824052) | |
| 762-1008, gnl|Hg17|chr19 (53824018-53823772) | |
| 762-1008, gnl|loxAfr1|scaffold_20690 (59633-59910) | |
| 762-1008, gnl|mm7|chr7 (41888062-41887785) | |
| 762-1008, gnl|Mm7|chr7 (41887817-41888063) | |
| 762-1008, gnl|monDom2|scaffold_18 (34670540-34670813) | |
| 762-1008, gnl|oryCun1|scaffold_192657 (3846-4090) | |
| 762-1008, gnl|panTro1|chr20 (51205249-51205526) | |
| 762-1008, gnl|rheMac2|chr19 (54933247-54933524) | |
| 762-1008, gnl|rn3|chr1 (96258222-96257945) | |
| 762-1008, gnl|tetNig1|chr8 (8562372-8562019) | |
| 762-1008, gnl|xenTro1|scaffold_374 (82935-82679) | |
| 1144-1246, gnl|bosTau2|chr19 (49279636-49279738) | |
| 1144-1246, gnl|canFam2|chr9 (7311612-7311501) | |
| 1144-1246, gnl|danRer3|chrUn (95521394-95521504) | |
| 1144-1246, gnl|dasNov1|scaffold_109942 (117-228) | |
| 1144-1246, gnl|echTel1|scaffold_200444 (7247-7139) | |
| 1144-1246, gnl|fr1|chrUn (200882046-200882155) | |
| 1144-1246, gnl|hg17|chr17 (71893884-71893994) | |
| 1144-1246, gnl|Hg17|chr17 (71893994-71893892) | |
| 1144-1246, gnl|loxAfr1|scaffold_88594 (29802-29694) | |
| 1144-1246, gnl|mm7|chr11 (116644112-116644222) | |
| 1144-1246, gnl|Mm7|chr11 (116644222-116644122) | |
| 1144-1246, gnl|monDom2|scaffold_18 (34669898-34670008) | |
| 1144-1246, gnl|panTro1|chr19 (75258644-75258754) | |
| 1144-1246, gnl|rheMac2|chr16 (71742824-71742934) | |
| 1144-1246, gnl|rn3|chr10 (106658492-106658602) | |
| 1144-1246, gnl|tetNig1|chrUn_random (27274797-27274694) | |
| 1144-1246, gnl|xenTro1|scaffold_135 (1902472-1902359) |