Non-Coding RNA Search

Ss1.1-Mixn-0018d21.5

Sequence:


               
               GATTGGCTAGAGGAGGGCATCCACTGGCAGTGCTCGCCCGCAGATCTAGCCTTGGAACTT
AAGGCCAAGGGAAGAGCTTTGGAGTCCGCTGCCCACGCTTTTCTCCTAGAGCAGCAGCAG
CTGTGGCGACTGGAGTTGGTGCCGGGGAGCTTCCAAGCCAGTCTGATCTCCGACCGGGAA
CTTGGCCCTTCGCCCTCCGAGCCTCTCAACGTCCAGCGCTTAAGCAATGTCAACGTCGTC
TCTTATTTGCTGAACTCCTCCTATCTGGACGGCCTGCCCCGGGTAGAGCTCAGCTATCAG
AGCAGCGCTGGAAGGGGCAAGTTGGTGGATTTCCAGGCGCTGAGCCCGGAGAGCGGCAGC
CTGGATGAGGTCCTGTCTTCTCATCCGCAGCCGCTGAACGCGGAGATTGCTCATGCCTCG
TGGCAAGAATGTCCGCCTCTCTCTAGAGAAGGCCTGCCAGAAATCCACCATCTCCGCATG
AAACGGCTGGAATTCCTTCAACAGGCCAGCAAGGGCCAAGGGTTACCCACCCCTGACCAA
GATCATGGCTACCACAGCTTGGAGGAGGAGCACAGCCTGCTCCGGATGGATCTGAAGCAT
CCCAGAGATAGTCCCACACAGTGTATCCCCGTTCCTGGAACCGCCCAGGAACCCACAGAG
GAGAAAATAGAGTTGTTGACTGAAGAGGTTCCGCTTGCTCTGGAAAGACACGATTCCTCA
GAAAGCTGTGCATCATGTGAGTTTCCTGCTGAACAGGAGCCTGGAGAGGACCAAATAAGT
GTGGTGGACAACTCAGACATAGAAGATGACCTTCCCACCTCTGCCAGACCAGCCTGTAGT
AACAAATTGATAGATTACATTTTGGGAGGTGCAGCCAGTGACCTGGAAACAAGCTCTGAC
TCAGAAGGTGAGGATTGGGATGAAGATGCTGAGGATGATGGTTTTGATAGTGATGGCTCA
CTCTCAGACTCGGACCTTGAACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGGCTAGAGGAGGGCATCCACTGGCAGTGCTCGCCCGCAGATCTAGCCTTGGAACTT
AAGGCCAAGGGAAGAGCTTTGGAGTCCGCTGCCCACGCTTTTCTCCTAGAGCAGCAGCAG
CTGTGGCGACTGGAGTTGGTGCCGGGGAGCTTCCAAGCCAGTCTGATCTCCGACCGGGAA
CTTGGCCCTTCGCCCTCCGAGCCTCTCAACGTCCAGCGCTTAAGCAATGTCAACGTCGTC
TCTTATTTGCTGAACTCCTCCTATCTGGACGGCCTGCCCCGGGTAGAGCTCAGCTATCAG
AGCAGCGCTGGAAGGGGCAAGTTGGTGGATTTCCAGGCGCTGAGCCCGGAGAGCGGCAGC
CTGGATGAGGTCCTGTCTTCTCATCCGCAGCCGCTGAACGCGGAGATTGCTCATGCCTCG
TGGCAAGAATGTCCGCCTCTCTCTAGAGAAGGCCTGCCAGAAATCCACCATCTCCGCATG
AAACGGCTGGAATTCCTTCAACAGGCCAGCAAGGGCCAAGGGTTACCCACCCCTGACCAA
GATCATGGCTACCACAGCTTGGAGGAGGAGCACAGCCTGCTCCGGATGGATCTGAAGCAT
CCCAGAGATAGTCCCACACAGTGTATCCCCGTTCCTGGAACCGCCCAGGAACCCACAGAG
GAGAAAATAGAGTTGTTGACTGAAGAGGTTCCGCTTGCTCTGGAAAGACACGATTCCTCA
GAAAGCTGTGCATCATGTGAGTTTCCTGCTGAACAGGAGCCTGGAGAGGACCAAATAAGT
GTGGTGGACAACTCAGACATAGAAGATGACCTTCCCACCTCTGCCAGACCAGCCTGTAGT
AACAAATTGATAGATTACATTTTGGGAGGTGCAGCCAGTGACCTGGAAACAAGCTCTGAC
TCAGAAGGTGAGGATTGGGATGAAGATGCTGAGGATGATGGTTTTGATAGTGATGGCTCA
CTCTCAGACTCGGACCTTGAACGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8C390_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C390_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-667, - strand, RNAz p=0.977988
               

               
               788-980, + strand, RNAz p=0.904559

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-667, - strand, RNAz p=0.977988
               

               
               788-980, + strand, RNAz p=0.904559

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-980, gnl|bosTau2|chr16 (1986320-1987299)
               

               
               1-980, gnl|Hg17|chr1 (201111776-201110791)
               

               
               1-980, gnl|Mm7|chr1 (133033069-133034024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-980, gnl|bosTau2|chr16 (1986320-1987299)
               

               
               1-980, gnl|Hg17|chr1 (201111776-201110791)
               

               
               1-980, gnl|Mm7|chr1 (133033069-133034024)

	320-667, - strand, RNAz p=0.977988
	788-980, + strand, RNAz p=0.904559

	1-980, gnl\|bosTau2\|chr16 (1986320-1987299)
	1-980, gnl\|Hg17\|chr1 (201111776-201110791)
	1-980, gnl\|Mm7\|chr1 (133033069-133034024)