Non-Coding RNA Search

Ss1.1-Mixn-0018h11.5

Sequence:


               
               GGCCCAGGGAGCTGGGAGCGATTTAAAACGCTTTAGATTCCCCGGGTCTGGGTGGGGAGA
GCGAACTGGGTGCCTCCTGTATCCCCCACCCCCCAGCACCCCATGAGCCGACGTTCGGCC
CCATGGAGCCCGGCAACTATGCCACCTTGGACGGGGCCAAGGAGATCGAAGGCTTGCTGG
GAGCCGGAGGGAGTCGGAATCTGGTCGCCCACTCCCCACTGACCAGCCACCCAGCAGCGG
CGCCTACACTGATGCCCGCTGTCAACTACGCCCCCCTGGATCTGCCGGGCTCTGCGGAAC
CGCCAAAGCAGTGCCACCCATGCTCCGGGGTGCCCCAGGGGGCGTCCCCAGCTCCGGTGC
CTTATGGCTACTTTGGAGGCGGGTACTACTCCTGCCGAGTGTCCCGGAGCTCACTGAAAC
CCTGTGCCCAGGGGGCCACCCTGGCCGCCTACCCTGCGGAGACTCCCACGGCCGGGGAGG
AGTACCCCAGCCGCCCTACCGAGTTTGCCTTCTATCCGGGGTACCCGGGACCCTACCAGC
CTATGGCCAGTTACCTGGATGTGTCGGTGGTGCAGACCCTCGGCACCCCAGCGGAGCCTC
GCCACGACTCCCTGCTGCCTGTGGACAGTTACCAGCCTTGGGCCCTCACCGGTGGCTGGA
ACAGCCAGGTGTGCTGCCAGGGAGAACAGAACCCATCCGGTTCTTTCTGGAAGGCGGCAT
TTGCAGACTCTAGCGCGCAACACCCTCCGGAGGGCTGTGCCTTCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCAGGGAGCTGGGAGCGATTTAAAACGCTTTAGATTCCCCGGGTCTGGGTGGGGAGA
GCGAACTGGGTGCCTCCTGTATCCCCCACCCCCCAGCACCCCATGAGCCGACGTTCGGCC
CCATGGAGCCCGGCAACTATGCCACCTTGGACGGGGCCAAGGAGATCGAAGGCTTGCTGG
GAGCCGGAGGGAGTCGGAATCTGGTCGCCCACTCCCCACTGACCAGCCACCCAGCAGCGG
CGCCTACACTGATGCCCGCTGTCAACTACGCCCCCCTGGATCTGCCGGGCTCTGCGGAAC
CGCCAAAGCAGTGCCACCCATGCTCCGGGGTGCCCCAGGGGGCGTCCCCAGCTCCGGTGC
CTTATGGCTACTTTGGAGGCGGGTACTACTCCTGCCGAGTGTCCCGGAGCTCACTGAAAC
CCTGTGCCCAGGGGGCCACCCTGGCCGCCTACCCTGCGGAGACTCCCACGGCCGGGGAGG
AGTACCCCAGCCGCCCTACCGAGTTTGCCTTCTATCCGGGGTACCCGGGACCCTACCAGC
CTATGGCCAGTTACCTGGATGTGTCGGTGGTGCAGACCCTCGGCACCCCAGCGGAGCCTC
GCCACGACTCCCTGCTGCCTGTGGACAGTTACCAGCCTTGGGCCCTCACCGGTGGCTGGA
ACAGCCAGGTGTGCTGCCAGGGAGAACAGAACCCATCCGGTTCTTTCTGGAAGGCGGCAT
TTGCAGACTCTAGCGCGCAACACCCTCCGGAGGGCTGTGCCTTCCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30583659|gb|AAP36078.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30583659|gb|AAP36078.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-200, - strand, RNAz p=0.990869
               

               
               609-726, + strand, RNAz p=0.771745

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-200, - strand, RNAz p=0.990869
               

               
               609-726, + strand, RNAz p=0.771745

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006361, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006361, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-726, gnl|bosTau2|chr19 (31421626-31422349)
               

               
               2-726, gnl|Hg17|chr17 (44161073-44160354)
               

               
               2-726, gnl|Mm7|chr11 (96303362-96304085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-726, gnl|bosTau2|chr19 (31421626-31422349)
               

               
               2-726, gnl|Hg17|chr17 (44161073-44160354)
               

               
               2-726, gnl|Mm7|chr11 (96303362-96304085)

	41-200, - strand, RNAz p=0.990869
	609-726, + strand, RNAz p=0.771745

	2-726, gnl\|bosTau2\|chr19 (31421626-31422349)
	2-726, gnl\|Hg17\|chr17 (44161073-44160354)
	2-726, gnl\|Mm7\|chr11 (96303362-96304085)