Non-Coding RNA Search

Ss1.1-Mixn-0018k04.5

Sequence:


               
               CCACCAGACAGCACTGCGGGCCACAGTAAACTAAATTCTGCAGCCTTTCCCTCTCAGGAG
AATGTAAATGGAGTCACAGAAGAAGCTGGAGATGACAGGGGGCTGCCAAAGGCCAGTCAG
AAGGACAGGCTGGCATTTCCTGAAGAGGCCCTTTCAGCCATTCCTTGCGAAGCAGAGGAG
AGGGACATTGACTCAGGGGGCGCAGAGAGGAGTGAACTCGTGCAGAAGGCCTCACCCCAG
TGCTGCCCAGAGCTGCCAGGTGGTCTAAGAACACACTCCAAGAAGGAACAGGATGGCTGG
AGTGGAGCCGGGGGCATCCTCTTCAAAGGGAAGGTGCCCGTGGTTGTCTTGCAGGACATC
CTGGCCGACAAACTCCCAGCCAAGTCTGCCGAGACACCTCTGGGCCAGGGTGTGCCATCC
GAGGGCGAGATGCTGGAGTCCAGCCCCGAGGAGGACTCTGTCCTGAGCCATTCGTCCCTG
AGCTCCTCCTCTCCTACCAGCTCGCCTGAGGGGCAGTCTGCTCCCACAAAGCGCAGCAGC
CCCAGCCCCCTCCCCACCTCCACACCCATCCGCCGAATGAGTAAGAAATTGGTCAAAGGA
TCCGCGGAGAAGAACAAGATGAGACTTCAAAGAGATAAGGAACGTCTGGGCAAGCAGCTA
AAGCTCCGGGCTGAGAAGGAAGAGAAGGAGAAGCTGAGGGAGGAGGCCAAGCGGGCCAAG
GAGGAGGCCAAAAAGAAGAAAGAGGAGGAGAAGGAACTGAAGGAGAGGGAGCGGCGGGAG
AAGCGAGAGAAGGATGAGAAGAAGAAGGCCGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCAGACAGCACTGCGGGCCACAGTAAACTAAATTCTGCAGCCTTTCCCTCTCAGGAG
AATGTAAATGGAGTCACAGAAGAAGCTGGAGATGACAGGGGGCTGCCAAAGGCCAGTCAG
AAGGACAGGCTGGCATTTCCTGAAGAGGCCCTTTCAGCCATTCCTTGCGAAGCAGAGGAG
AGGGACATTGACTCAGGGGGCGCAGAGAGGAGTGAACTCGTGCAGAAGGCCTCACCCCAG
TGCTGCCCAGAGCTGCCAGGTGGTCTAAGAACACACTCCAAGAAGGAACAGGATGGCTGG
AGTGGAGCCGGGGGCATCCTCTTCAAAGGGAAGGTGCCCGTGGTTGTCTTGCAGGACATC
CTGGCCGACAAACTCCCAGCCAAGTCTGCCGAGACACCTCTGGGCCAGGGTGTGCCATCC
GAGGGCGAGATGCTGGAGTCCAGCCCCGAGGAGGACTCTGTCCTGAGCCATTCGTCCCTG
AGCTCCTCCTCTCCTACCAGCTCGCCTGAGGGGCAGTCTGCTCCCACAAAGCGCAGCAGC
CCCAGCCCCCTCCCCACCTCCACACCCATCCGCCGAATGAGTAAGAAATTGGTCAAAGGA
TCCGCGGAGAAGAACAAGATGAGACTTCAAAGAGATAAGGAACGTCTGGGCAAGCAGCTA
AAGCTCCGGGCTGAGAAGGAAGAGAAGGAGAAGCTGAGGGAGGAGGCCAAGCGGGCCAAG
GAGGAGGCCAAAAAGAAGAAAGAGGAGGAGAAGGAACTGAAGGAGAGGGAGCGGCGGGAG
AAGCGAGAGAAGGATGAGAAGAAGAAGGCCGAGGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7Z7K3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z7K3_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               280-393, - strand, RNAz p=0.718159
               

               
               468-583, - strand, RNAz p=0.890314

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-393, - strand, RNAz p=0.718159
               

               
               468-583, - strand, RNAz p=0.890314

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-583, gnl|bosTau2|chr7 (15091509-15090921)
               

               
               1-583, gnl|canFam2|chr20 (58219178-58218346)
               

               
               1-583, gnl|dasNov1|scaffold_27139 (10564-9729)
               

               
               1-583, gnl|echTel1|scaffold_165633 (6257-6990)
               

               
               1-583, gnl|galGal2|chr28 (1404553-1405336)
               

               
               1-583, gnl|hg17|chr19 (4359948-4360771)
               

               
               1-583, gnl|Hg17|chr19 (4360172-4360763)
               

               
               1-583, gnl|loxAfr1|scaffold_16332 (22694-21877)
               

               
               1-583, gnl|mm7|chr17 (54206214-54206994)
               

               
               1-583, gnl|Mm7|chr17 (54206429-54206984)
               

               
               1-583, gnl|monDom2|scaffold_85 (1283148-1283965)
               

               
               1-583, gnl|panTro1|chr20 (4639732-4640555)
               

               
               1-583, gnl|rheMac2|chr19 (4273662-4274485)
               

               
               1-583, gnl|rn3|chrUn (25742387-25741606)
               


               
               634-816, gnl|bosTau2|chr7 (15082285-15082103)
               

               
               634-816, gnl|Hg17|chr19 (4373563-4373745)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-583, gnl|bosTau2|chr7 (15091509-15090921)
               

               
               1-583, gnl|canFam2|chr20 (58219178-58218346)
               

               
               1-583, gnl|dasNov1|scaffold_27139 (10564-9729)
               

               
               1-583, gnl|echTel1|scaffold_165633 (6257-6990)
               

               
               1-583, gnl|galGal2|chr28 (1404553-1405336)
               

               
               1-583, gnl|hg17|chr19 (4359948-4360771)
               

               
               1-583, gnl|Hg17|chr19 (4360172-4360763)
               

               
               1-583, gnl|loxAfr1|scaffold_16332 (22694-21877)
               

               
               1-583, gnl|mm7|chr17 (54206214-54206994)
               

               
               1-583, gnl|Mm7|chr17 (54206429-54206984)
               

               
               1-583, gnl|monDom2|scaffold_85 (1283148-1283965)
               

               
               1-583, gnl|panTro1|chr20 (4639732-4640555)
               

               
               1-583, gnl|rheMac2|chr19 (4273662-4274485)
               

               
               1-583, gnl|rn3|chrUn (25742387-25741606)
               


               
               634-816, gnl|bosTau2|chr7 (15082285-15082103)
               

               
               634-816, gnl|Hg17|chr19 (4373563-4373745)

	280-393, - strand, RNAz p=0.718159
	468-583, - strand, RNAz p=0.890314

	1-583, gnl\|bosTau2\|chr7 (15091509-15090921)
	1-583, gnl\|canFam2\|chr20 (58219178-58218346)
	1-583, gnl\|dasNov1\|scaffold_27139 (10564-9729)
	1-583, gnl\|echTel1\|scaffold_165633 (6257-6990)
	1-583, gnl\|galGal2\|chr28 (1404553-1405336)
	1-583, gnl\|hg17\|chr19 (4359948-4360771)
	1-583, gnl\|Hg17\|chr19 (4360172-4360763)
	1-583, gnl\|loxAfr1\|scaffold_16332 (22694-21877)
	1-583, gnl\|mm7\|chr17 (54206214-54206994)
	1-583, gnl\|Mm7\|chr17 (54206429-54206984)
	1-583, gnl\|monDom2\|scaffold_85 (1283148-1283965)
	1-583, gnl\|panTro1\|chr20 (4639732-4640555)
	1-583, gnl\|rheMac2\|chr19 (4273662-4274485)
	1-583, gnl\|rn3\|chrUn (25742387-25741606)

	634-816, gnl\|bosTau2\|chr7 (15082285-15082103)
	634-816, gnl\|Hg17\|chr19 (4373563-4373745)