Non-Coding RNA Search

Ss1.1-Mixn-0018o05.5

Sequence:


               
               TCCGGCCCGAGGACACGGACTACCAGCAGGCGCTGCTGCTGCTGGGGGCCGCGGCGCTGG
CCTGCCTCGCCCTGGACCTCCTCTTCCTGCTCTTCTACTCCTTCTGGCTGTGCTGCCGGC
GCCGCAAAAGCGAGGAGCACCTGGACGCCGACTGCTGCTGCACCGCCTGGTGCGTCATCA
TCGCCACTCTGGTCTGCAGCGCCGGCATCGCCGTGGGATTCTATGGCAACGGGGAAACCA
GCGACGGCATCCATCGGGCGACCTACTCGCTCCGCCACGCCAACCGTACGGTGGCGGGGG
TCCAGGACCGCGTGTGGGATACCGCTACGGCCCTGAACCTCACGGCGGAGCCCAGCCTGC
AGAGCCTGGAAAGGCAGCTGGCGACTCGGCCGGACCCTCTGCGGGCGGTCCAGCGGCTGC
AAGGCCTGCTCAAGACGCTGCTGGGCTATGCAGCTGCCATCCCGTTCTGGAGGAACCCAG
CTGTGTCCCTGGAGGTGCTGGCGGAGCAGGTGGATCTCTATGACTGGTACAGGTGGCTGG
GCTACCTGGGCCTGCTGCTGCTCGACGTTGCCATCTGTCTTCTGGTACTGGTCGGCCTCA
TCCGCAGCTCCAAGGGCATCTTGGTTGGGGTCTGCCTCCTGGGTGTCCTGGCCCTGATCA
TCAGCTGGGGTGCCCTGGGCTTGGAGCTGGCCGTGTCTGTGGGCTCCAGCGACTTCTGCG
TGGACCCCGACACCTATGTGACCAGGATGGTGGAGGAGCACTCGGTGCTGAGCGGGGACA
TCCTGCAGTACTACGTGACCTGCTCGCCCTATGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGCCCGAGGACACGGACTACCAGCAGGCGCTGCTGCTGCTGGGGGCCGCGGCGCTGG
CCTGCCTCGCCCTGGACCTCCTCTTCCTGCTCTTCTACTCCTTCTGGCTGTGCTGCCGGC
GCCGCAAAAGCGAGGAGCACCTGGACGCCGACTGCTGCTGCACCGCCTGGTGCGTCATCA
TCGCCACTCTGGTCTGCAGCGCCGGCATCGCCGTGGGATTCTATGGCAACGGGGAAACCA
GCGACGGCATCCATCGGGCGACCTACTCGCTCCGCCACGCCAACCGTACGGTGGCGGGGG
TCCAGGACCGCGTGTGGGATACCGCTACGGCCCTGAACCTCACGGCGGAGCCCAGCCTGC
AGAGCCTGGAAAGGCAGCTGGCGACTCGGCCGGACCCTCTGCGGGCGGTCCAGCGGCTGC
AAGGCCTGCTCAAGACGCTGCTGGGCTATGCAGCTGCCATCCCGTTCTGGAGGAACCCAG
CTGTGTCCCTGGAGGTGCTGGCGGAGCAGGTGGATCTCTATGACTGGTACAGGTGGCTGG
GCTACCTGGGCCTGCTGCTGCTCGACGTTGCCATCTGTCTTCTGGTACTGGTCGGCCTCA
TCCGCAGCTCCAAGGGCATCTTGGTTGGGGTCTGCCTCCTGGGTGTCCTGGCCCTGATCA
TCAGCTGGGGTGCCCTGGGCTTGGAGCTGGCCGTGTCTGTGGGCTCCAGCGACTTCTGCG
TGGACCCCGACACCTATGTGACCAGGATGGTGGAGGAGCACTCGGTGCTGAGCGGGGACA
TCCTGCAGTACTACGTGACCTGCTCGCCCTATGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PCX0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PCX0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-460, + strand, RNAz p=0.839997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-460, + strand, RNAz p=0.839997

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK074158, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074158, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               27-199, gnl|bosTau2|chr25 (39051742-39051914)
               

               
               27-199, gnl|canFam2|chr6 (17618302-17618494)
               

               
               27-199, gnl|danRer3|chr1 (8472367-8472179)
               

               
               27-199, gnl|echTel1|scaffold_271052 (2877-3065)
               

               
               27-199, gnl|fr1|chrUn (22588184-22588372)
               

               
               27-199, gnl|galGal2|chr14 (5431759-5431579)
               

               
               27-199, gnl|hg17|chr7 (2459712-2459904)
               

               
               27-199, gnl|Hg17|chr7 (2459725-2459897)
               

               
               27-199, gnl|loxAfr1|scaffold_56140 (7568-7757)
               

               
               27-199, gnl|mm7|chr5 (139607042-139606850)
               

               
               27-199, gnl|Mm7|chr5 (139607027-139606855)
               

               
               27-199, gnl|monDom2|scaffold_17 (694699-694514)
               

               
               27-199, gnl|oryCun1|scaffold_162258 (7407-7216)
               

               
               27-199, gnl|panTro1|chr6 (2665276-2665468)
               

               
               27-199, gnl|rheMac2|chr3 (40566817-40566625)
               

               
               27-199, gnl|rn3|chr12 (14506415-14506607)
               

               
               27-199, gnl|tetNig1|chr18 (8786769-8786974)
               

               
               27-199, gnl|xenTro1|scaffold_90 (652905-653082)
               


               
               302-599, gnl|bosTau2|chr25 (39052322-39052616)
               

               
               302-599, gnl|Hg17|chr7 (2460283-2460585)
               

               
               302-599, gnl|Mm7|chr5 (139606362-139606060)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-199, gnl|bosTau2|chr25 (39051742-39051914)
               

               
               27-199, gnl|canFam2|chr6 (17618302-17618494)
               

               
               27-199, gnl|danRer3|chr1 (8472367-8472179)
               

               
               27-199, gnl|echTel1|scaffold_271052 (2877-3065)
               

               
               27-199, gnl|fr1|chrUn (22588184-22588372)
               

               
               27-199, gnl|galGal2|chr14 (5431759-5431579)
               

               
               27-199, gnl|hg17|chr7 (2459712-2459904)
               

               
               27-199, gnl|Hg17|chr7 (2459725-2459897)
               

               
               27-199, gnl|loxAfr1|scaffold_56140 (7568-7757)
               

               
               27-199, gnl|mm7|chr5 (139607042-139606850)
               

               
               27-199, gnl|Mm7|chr5 (139607027-139606855)
               

               
               27-199, gnl|monDom2|scaffold_17 (694699-694514)
               

               
               27-199, gnl|oryCun1|scaffold_162258 (7407-7216)
               

               
               27-199, gnl|panTro1|chr6 (2665276-2665468)
               

               
               27-199, gnl|rheMac2|chr3 (40566817-40566625)
               

               
               27-199, gnl|rn3|chr12 (14506415-14506607)
               

               
               27-199, gnl|tetNig1|chr18 (8786769-8786974)
               

               
               27-199, gnl|xenTro1|scaffold_90 (652905-653082)
               


               
               302-599, gnl|bosTau2|chr25 (39052322-39052616)
               

               
               302-599, gnl|Hg17|chr7 (2460283-2460585)
               

               
               302-599, gnl|Mm7|chr5 (139606362-139606060)

	27-199, gnl\|bosTau2\|chr25 (39051742-39051914)
	27-199, gnl\|canFam2\|chr6 (17618302-17618494)
	27-199, gnl\|danRer3\|chr1 (8472367-8472179)
	27-199, gnl\|echTel1\|scaffold_271052 (2877-3065)
	27-199, gnl\|fr1\|chrUn (22588184-22588372)
	27-199, gnl\|galGal2\|chr14 (5431759-5431579)
	27-199, gnl\|hg17\|chr7 (2459712-2459904)
	27-199, gnl\|Hg17\|chr7 (2459725-2459897)
	27-199, gnl\|loxAfr1\|scaffold_56140 (7568-7757)
	27-199, gnl\|mm7\|chr5 (139607042-139606850)
	27-199, gnl\|Mm7\|chr5 (139607027-139606855)
	27-199, gnl\|monDom2\|scaffold_17 (694699-694514)
	27-199, gnl\|oryCun1\|scaffold_162258 (7407-7216)
	27-199, gnl\|panTro1\|chr6 (2665276-2665468)
	27-199, gnl\|rheMac2\|chr3 (40566817-40566625)
	27-199, gnl\|rn3\|chr12 (14506415-14506607)
	27-199, gnl\|tetNig1\|chr18 (8786769-8786974)
	27-199, gnl\|xenTro1\|scaffold_90 (652905-653082)

	302-599, gnl\|bosTau2\|chr25 (39052322-39052616)
	302-599, gnl\|Hg17\|chr7 (2460283-2460585)
	302-599, gnl\|Mm7\|chr5 (139606362-139606060)