Non-Coding RNA Search

Ss1.1-Mixn-0019j06.5

Sequence:


               
               AAGATCCCTCCGTCCTCGGCACCCACAGTGCTGAGCGTCCCAGCCGGCACCACCATCGTC
AAGACAGTGGCCGTGACGCCTGGCACCACCACGCTCCCAGCCACCGTGAAGGTGGCTTCC
TCGCCTGTCATGGTGAGCAACCCAGCCACTCGCATGCTGAAGACCGCGGCTGCCCAGGTG
GGGACGTCCGTCTCCTCTGCGGCCAACACGTCCACCCGTCCCATCATCACAGTACACAAG
TCAGGGACTGTGACAGTGGCCCAGCAAGCCCAGGTGGTGACCACGGTGGTGGGTGGGGTC
ACCAAGACCATCACCCTGGTGAAGAGTCCCATCTCCGTCCCCGGAGGCAGTGCTCTGATT
TCCAACCTGGGCAAGGTGATGTCTGTGGTCCAGACCAAGCCAGTTCAGACCTCCGCCGTC
ACGGGCCAGGCGTCCACCGGCCCGGTGACTCAGATCATCCAGACCAAAGGGCCCCTGCCA
GCCGGGACCATCCTGAAGCTGGTGACGTCCGCAGACGGCAAGCCCACCACCATCATCACG
ACCACGCAGGCTGGCGGGGCAGGCACGAAGCCCACCATTCTTGGCATCAGCAGCGTGTCC
CCCAGCACCACGAAGCCGGGCACCACCACCATCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATCCCTCCGTCCTCGGCACCCACAGTGCTGAGCGTCCCAGCCGGCACCACCATCGTC
AAGACAGTGGCCGTGACGCCTGGCACCACCACGCTCCCAGCCACCGTGAAGGTGGCTTCC
TCGCCTGTCATGGTGAGCAACCCAGCCACTCGCATGCTGAAGACCGCGGCTGCCCAGGTG
GGGACGTCCGTCTCCTCTGCGGCCAACACGTCCACCCGTCCCATCATCACAGTACACAAG
TCAGGGACTGTGACAGTGGCCCAGCAAGCCCAGGTGGTGACCACGGTGGTGGGTGGGGTC
ACCAAGACCATCACCCTGGTGAAGAGTCCCATCTCCGTCCCCGGAGGCAGTGCTCTGATT
TCCAACCTGGGCAAGGTGATGTCTGTGGTCCAGACCAAGCCAGTTCAGACCTCCGCCGTC
ACGGGCCAGGCGTCCACCGGCCCGGTGACTCAGATCATCCAGACCAAAGGGCCCCTGCCA
GCCGGGACCATCCTGAAGCTGGTGACGTCCGCAGACGGCAAGCCCACCACCATCATCACG
ACCACGCAGGCTGGCGGGGCAGGCACGAAGCCCACCATTCTTGGCATCAGCAGCGTGTCC
CCCAGCACCACGAAGCCGGGCACCACCACCATCATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               212-331, - strand, RNAz p=0.749375
               

               
               460-579, - strand, RNAz p=0.549546

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-331, - strand, RNAz p=0.749375
               

               
               460-579, - strand, RNAz p=0.549546

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               132-357, gnl|bosTau2|chr7 (6335154-6334929)
               

               
               132-357, gnl|Hg17|chrX (152744548-152744323)
               

               
               132-357, gnl|Mm7|chrX (69339700-69339475)
               


               
               460-635, gnl|bosTau2|chr7 (6334375-6334200)
               

               
               460-635, gnl|Hg17|chrX (152743834-152743659)
               

               
               460-635, gnl|Mm7|chrX (69339044-69338869)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-357, gnl|bosTau2|chr7 (6335154-6334929)
               

               
               132-357, gnl|Hg17|chrX (152744548-152744323)
               

               
               132-357, gnl|Mm7|chrX (69339700-69339475)
               


               
               460-635, gnl|bosTau2|chr7 (6334375-6334200)
               

               
               460-635, gnl|Hg17|chrX (152743834-152743659)
               

               
               460-635, gnl|Mm7|chrX (69339044-69338869)

	212-331, - strand, RNAz p=0.749375
	460-579, - strand, RNAz p=0.549546

	132-357, gnl\|bosTau2\|chr7 (6335154-6334929)
	132-357, gnl\|Hg17\|chrX (152744548-152744323)
	132-357, gnl\|Mm7\|chrX (69339700-69339475)

	460-635, gnl\|bosTau2\|chr7 (6334375-6334200)
	460-635, gnl\|Hg17\|chrX (152743834-152743659)
	460-635, gnl\|Mm7\|chrX (69339044-69338869)