Non-Coding RNA Search

Ss1.1-Mixn-0019l03.5

Sequence:


               
               CTGGATCCTCAGCCTGCTGAGCTACGGAACTCCCAGATTTGGGAGTTGAAAGTGGTTCCA
ACTCTACCCAAAGGAGGGAGGTGGCTGTGACTAAGCCCCAGCTTCAGGTTCTATCTAGAG
GCAGCGCCAGAGGCTCCTTCCAGGGCCAAACTCTGAGGGGCGGTGGGGAGGGTCTCCTCC
CAACATGACGCAGTGTGAGGTCACACAGGCCACCAGTGAACAAAGACGACAAACGCGGTT
ACGTGCAGGGACGAGTCACACTGTGCACGTGTCCTTGGGGGGGTTCAGCCCGGCCTCCCT
GTCCCCGCATTTGCCCCCCCCTACCCTTTTAACACCCAGCGAGCCAGGATTAGCTCTGAA
ATCTCCCCAAGTTCAAAGTGCTCCAGCAAGGCAAGGCACCCGGCTGCCTCCTACCCCAGC
AGATCAGACTCACAGTCACGCCACGTCCCCCTGGGAAAAGCACACCCCCGGGACCTGGGG
GCAGGAGGCTGGGTGCCGGTGCAGTGGGAGGAGGACAGACCCCCCTTCCCACGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATCCTCAGCCTGCTGAGCTACGGAACTCCCAGATTTGGGAGTTGAAAGTGGTTCCA
ACTCTACCCAAAGGAGGGAGGTGGCTGTGACTAAGCCCCAGCTTCAGGTTCTATCTAGAG
GCAGCGCCAGAGGCTCCTTCCAGGGCCAAACTCTGAGGGGCGGTGGGGAGGGTCTCCTCC
CAACATGACGCAGTGTGAGGTCACACAGGCCACCAGTGAACAAAGACGACAAACGCGGTT
ACGTGCAGGGACGAGTCACACTGTGCACGTGTCCTTGGGGGGGTTCAGCCCGGCCTCCCT
GTCCCCGCATTTGCCCCCCCCTACCCTTTTAACACCCAGCGAGCCAGGATTAGCTCTGAA
ATCTCCCCAAGTTCAAAGTGCTCCAGCAAGGCAAGGCACCCGGCTGCCTCCTACCCCAGC
AGATCAGACTCACAGTCACGCCACGTCCCCCTGGGAAAAGCACACCCCCGGGACCTGGGG
GCAGGAGGCTGGGTGCCGGTGCAGTGGGAGGAGGACAGACCCCCCTTCCCACGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               374-490, - strand, RNAz p=0.938454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-490, - strand, RNAz p=0.938454

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-540, gnl|bosTau2|chr11 (78446953-78446452)
               

               
               46-540, gnl|Hg17|chr9 (128471612-128471115)
               

               
               46-540, gnl|Mm7|chr2 (30036532-30036107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-540, gnl|bosTau2|chr11 (78446953-78446452)
               

               
               46-540, gnl|Hg17|chr9 (128471612-128471115)
               

               
               46-540, gnl|Mm7|chr2 (30036532-30036107)

	46-540, gnl\|bosTau2\|chr11 (78446953-78446452)
	46-540, gnl\|Hg17\|chr9 (128471612-128471115)
	46-540, gnl\|Mm7\|chr2 (30036532-30036107)