Non-Coding RNA Search

Ss1.1-Mixn-0019n23.5

Sequence:


               
               TTTTTTTTTTGATAGAAATAAAATTTATTTGATGATGATCCAATGTCCACAGATCTCTGT
ACAGGCTTAACTGGGAAAACAAAGATGACCTTGACTGTCTAGCTTTCAAAAGGCTCACAG
CCAAGCAAGACAAGCACATGGGTAAGATTTTAAAATGAGGCAGAGTGACAATATAAATTA
GGAACCAGGCCACAGGGGACTCAAGGAAAGCAAGTCTGCAAGGGGCTTCTGAAGCCTTCC
TGGAGGTGGCATCAGGGCTGAACCTGGCAGTCTGAGCTGGTGGGCTGAGATGATGTGGAG
GGGACCCTTGGGGCTGAATCTAAGACCAGAAAAGGTATGAGTTCAAGCAAGTGAGGACAA
AAAGGAGGAATCCCAGTCAGAAGAGCCTGCTGCCGGTGGAAAAGTGGGACCTGGGGCCAG
GGAAGGACAGAGCCAGCCCTCAGGGGGTTCTGAGGCCAGGTTCAGCTCGGCCCACTGGCT
CTGACCAGCTCCTGCTACTTCCTCCTCGGGGGGGCGGGACTGCAGGCAGCCCCTTGCCCG
CCCTCAACCCTGCCCCTTCTCTGACCAGCTCTTCGGGTGGCTGCTCATCGGCGTGGTGGC
CATCCTGGTGTTCCTGACCAAGTGCCTCAAGCATTACTGCTCCCCACTCAGCTACCGCCA
GGAGGCCTACTGGGCACAGTACCGCACCAACGAGGACCAGCTCTTCCAGCGCACGGCCGA
GGTGCACTCGCGGGTGTTGGCTGCCAACAACGTGCGCCGCTTCTTTGGCTTCGTGGCGCT
CAACAAGGATGACGAGGAGCTGGTTGCCAAGTTCCCAGTGGAAGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGATAGAAATAAAATTTATTTGATGATGATCCAATGTCCACAGATCTCTGT
ACAGGCTTAACTGGGAAAACAAAGATGACCTTGACTGTCTAGCTTTCAAAAGGCTCACAG
CCAAGCAAGACAAGCACATGGGTAAGATTTTAAAATGAGGCAGAGTGACAATATAAATTA
GGAACCAGGCCACAGGGGACTCAAGGAAAGCAAGTCTGCAAGGGGCTTCTGAAGCCTTCC
TGGAGGTGGCATCAGGGCTGAACCTGGCAGTCTGAGCTGGTGGGCTGAGATGATGTGGAG
GGGACCCTTGGGGCTGAATCTAAGACCAGAAAAGGTATGAGTTCAAGCAAGTGAGGACAA
AAAGGAGGAATCCCAGTCAGAAGAGCCTGCTGCCGGTGGAAAAGTGGGACCTGGGGCCAG
GGAAGGACAGAGCCAGCCCTCAGGGGGTTCTGAGGCCAGGTTCAGCTCGGCCCACTGGCT
CTGACCAGCTCCTGCTACTTCCTCCTCGGGGGGGCGGGACTGCAGGCAGCCCCTTGCCCG
CCCTCAACCCTGCCCCTTCTCTGACCAGCTCTTCGGGTGGCTGCTCATCGGCGTGGTGGC
CATCCTGGTGTTCCTGACCAAGTGCCTCAAGCATTACTGCTCCCCACTCAGCTACCGCCA
GGAGGCCTACTGGGCACAGTACCGCACCAACGAGGACCAGCTCTTCCAGCGCACGGCCGA
GGTGCACTCGCGGGTGTTGGCTGCCAACAACGTGCGCCGCTTCTTTGGCTTCGTGGCGCT
CAACAAGGATGACGAGGAGCTGGTTGCCAAGTTCCCAGTGGAAGGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870662|ref|XP_595513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870662|ref|XP_595513.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-694, - strand, RNAz p=0.959681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-694, - strand, RNAz p=0.959681

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               14-166, gnl|bosTau2|chr26 (15978638-15978784)
               

               
               14-166, gnl|Hg17|chr10 (105197823-105197611)
               


               
               312-828, gnl|bosTau2|chr26 (15978777-15979289)
               

               
               312-828, gnl|Hg17|chr10 (105197622-105197056)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-166, gnl|bosTau2|chr26 (15978638-15978784)
               

               
               14-166, gnl|Hg17|chr10 (105197823-105197611)
               


               
               312-828, gnl|bosTau2|chr26 (15978777-15979289)
               

               
               312-828, gnl|Hg17|chr10 (105197622-105197056)

	14-166, gnl\|bosTau2\|chr26 (15978638-15978784)
	14-166, gnl\|Hg17\|chr10 (105197823-105197611)

	312-828, gnl\|bosTau2\|chr26 (15978777-15979289)
	312-828, gnl\|Hg17\|chr10 (105197622-105197056)