Non-Coding RNA Search

Ss1.1-Mixn-0020f21.5

Sequence:


               
               GTTGCGGCGGCTCCGGGACAAGAGGGAGGAGCCCGGGGAGCGCCGTGAGATGGGCCGACT
CCCAAGCCAGTGGGGAGGACACTGCTTCTTACTACAGCTGCTCAGAAGCACCACTGGAAG
CTCAGATGTGGGCGCCCCAGCCAGCAGCAGAGAGGGGTGCAGGGGAGCCACAAAGAAGCC
CCTTCTGATGCCCCAAGGAGCAAGCCGACCACTTCCAGGCTCCAGGAACACCACAAAGCA
ATATGAAACCTGTTCATGAAAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCC
CCGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCAACTAACCACACACCCTCCA
GTGATGCCTCTGAATGGTCCCGAGGGATTGTGGTGGCAGGGCAGAGCCAGGCAGGAGCCA
GAGTCAGCCTGGGGGGTGATGGAGCTGAGGCCATCACTGGTCTGACAGTGGACCAGTATG
GCATGCTGTATAAGGTGGCTGTGCCACCTGCCACCTTCTCCCCAACTGGCCTCCCATCCG
TGGTGAATATGAGCCCCTTGCCCCCCACATTTAATGTAGCGTCTTCACTGATTCAACATC
CAGGAATCCACTATCCCCCAATTCACTATGCTCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCGGCGGCTCCGGGACAAGAGGGAGGAGCCCGGGGAGCGCCGTGAGATGGGCCGACT
CCCAAGCCAGTGGGGAGGACACTGCTTCTTACTACAGCTGCTCAGAAGCACCACTGGAAG
CTCAGATGTGGGCGCCCCAGCCAGCAGCAGAGAGGGGTGCAGGGGAGCCACAAAGAAGCC
CCTTCTGATGCCCCAAGGAGCAAGCCGACCACTTCCAGGCTCCAGGAACACCACAAAGCA
ATATGAAACCTGTTCATGAAAGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCC
CCGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCAACTAACCACACACCCTCCA
GTGATGCCTCTGAATGGTCCCGAGGGATTGTGGTGGCAGGGCAGAGCCAGGCAGGAGCCA
GAGTCAGCCTGGGGGGTGATGGAGCTGAGGCCATCACTGGTCTGACAGTGGACCAGTATG
GCATGCTGTATAAGGTGGCTGTGCCACCTGCCACCTTCTCCCCAACTGGCCTCCCATCCG
TGGTGAATATGAGCCCCTTGCCCCCCACATTTAATGTAGCGTCTTCACTGATTCAACATC
CAGGAATCCACTATCCCCCAATTCACTATGCTCAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               362-561, - strand, RNAz p=0.965443

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-561, - strand, RNAz p=0.965443

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               400-487, + strand, RNAmicro p=0.944543

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               400-487, + strand, RNAmicro p=0.944543

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               123-636, gnl|bosTau2|chr18 (32353619-32353106)
               

               
               123-636, gnl|Hg17|chr16 (70441025-70441538)
               

               
               123-636, gnl|Mm7|chr8 (108333877-108333367)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-636, gnl|bosTau2|chr18 (32353619-32353106)
               

               
               123-636, gnl|Hg17|chr16 (70441025-70441538)
               

               
               123-636, gnl|Mm7|chr8 (108333877-108333367)

	123-636, gnl\|bosTau2\|chr18 (32353619-32353106)
	123-636, gnl\|Hg17\|chr16 (70441025-70441538)
	123-636, gnl\|Mm7\|chr8 (108333877-108333367)