Non-Coding RNA Search

Ss1.1-Mixn-0020g09.5

Sequence:


               
               CGAGAGTTCACCTTCCGCGGGCGGCCCGCGGGCGGCGGCAGCCTCTGCGGCGGGGGCGTC
CTCGGGGCGCGGGGCCTCTACGGCAGCAGCCAGAGGAGCAGCCGAGGCCGGGGACTGCGG
GAGTTCGGGCAGCCAGAGGACTTCCCCAGGGCCAAGCCCCGGCGGAGGATCGCCAGCGAG
ACCCACAGCGAGGGCTCCGAGTACGAGGAGCTGCCCAAGCGGCGGCGGCAGAGAGGCGCG
GAGGCCGGGGACGAGGGCCCGCGCCTGGAGAGGGAGGAGGCCGCCGTGAGGAAGGGCGAC
TTCAGGGAGTCCTGGCGGTCCAGCAGGATGTACACGAGGACCACGGGGGCCTGGATGCCA
AGAACCGAGGCCCCCGGGCCTTCGGCCGGGCCCTGCCCCCGCGGCTGAGCCACTGCGCGT
ACGGCCGGAGAACCTTCGTGGCCAAAGAGTCTGCCCACTGGCAGAGCAGGAGCCCCGGCG
CCTCCTGGCAGGAGTACAGCGCCCCCGACACGTGCGGGGCCCGGCGGCCCCTGGACAGAG
ACTACATCCCAGACGCCTACAGACACTCTGAGCCCTTGGGCGCCCGGGGCTTCGAGGACG
GCCACGTGGAGGACAAGAGGCCCTTCTTTCAAGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGAGTTCACCTTCCGCGGGCGGCCCGCGGGCGGCGGCAGCCTCTGCGGCGGGGGCGTC
CTCGGGGCGCGGGGCCTCTACGGCAGCAGCCAGAGGAGCAGCCGAGGCCGGGGACTGCGG
GAGTTCGGGCAGCCAGAGGACTTCCCCAGGGCCAAGCCCCGGCGGAGGATCGCCAGCGAG
ACCCACAGCGAGGGCTCCGAGTACGAGGAGCTGCCCAAGCGGCGGCGGCAGAGAGGCGCG
GAGGCCGGGGACGAGGGCCCGCGCCTGGAGAGGGAGGAGGCCGCCGTGAGGAAGGGCGAC
TTCAGGGAGTCCTGGCGGTCCAGCAGGATGTACACGAGGACCACGGGGGCCTGGATGCCA
AGAACCGAGGCCCCCGGGCCTTCGGCCGGGCCCTGCCCCCGCGGCTGAGCCACTGCGCGT
ACGGCCGGAGAACCTTCGTGGCCAAAGAGTCTGCCCACTGGCAGAGCAGGAGCCCCGGCG
CCTCCTGGCAGGAGTACAGCGCCCCCGACACGTGCGGGGCCCGGCGGCCCCTGGACAGAG
ACTACATCCCAGACGCCTACAGACACTCTGAGCCCTTGGGCGCCCGGGGCTTCGAGGACG
GCCACGTGGAGGACAAGAGGCCCTTCTTTCAAGACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               271-389, - strand, RNAz p=0.635953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-389, - strand, RNAz p=0.635953

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-634, gnl|bosTau2|chr11 (82052401-82053032)
               

               
               1-634, gnl|Hg17|chr9 (131380284-131380924)
               

               
               1-634, gnl|Mm7|chr2 (32221078-32221706)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-634, gnl|bosTau2|chr11 (82052401-82053032)
               

               
               1-634, gnl|Hg17|chr9 (131380284-131380924)
               

               
               1-634, gnl|Mm7|chr2 (32221078-32221706)

	1-634, gnl\|bosTau2\|chr11 (82052401-82053032)
	1-634, gnl\|Hg17\|chr9 (131380284-131380924)
	1-634, gnl\|Mm7\|chr2 (32221078-32221706)