Non-Coding RNA Search

Ss1.1-Mixn-0020n06.5

Sequence:


               
               AGCGACGAGGGAGCCACGCTGTTGCTGCAGGGACTGTGTGTCAACACCGTGGTGCGGTTT
CTGGATCTAAAGGGCAATAACCTTTGCGCTGCAGGAGCTGAGGCTCTGGGAAAACTCCTC
CGACAGAACAAGTCCATCCAGAGGTGAGGTGGCGGTCCCAGCCTTTGCTCCTTCTCAGCA
TGGCTCTGGGTTGGCTCCAGAGGACGCGGTGCACTCCTGCGCGCCAGTCTTCCTGGGCTG
CGCATGGACGGGGCCTCACCCTGGAGTGGAACAGCCTGGGCCCGTGGGAAGACGCCTTCG
CCACTTTCTGCGGGGCCCTGGCAGCCAACAGTACCCTGCGGCAGCTGGACCTCCGCAACA
ACCAGATCAGCCACAAGGGCGCCGAGGAGCTGGCCCTGGCCCTGAGGAGCAACGCCAGCC
TCCAGCAGCTGGGTGAGGCCGCCTGGCTCCGGGCCCTGGTCCTCAGACCAGGCTGGGCGG
TCTTGGTCGGGGCAAGGGCTTCATCTCTGGCCCCTCAGCCCTGGCTGCTTCCTTTGGTCT
GTCCCAGAGCGGAGGGTGTGGGGAACGAGGGCCCCCGACACAGGCAGTGCTGCCCCGCAA
AGGAAGTGTCTCAGGCTGCGCCAGCCCCCAGCCCCACCCTGTGCGACCCCAGGTTTCTTT
CCAGACCTGCGCTGGAATCACATCGGCCTCCTGGGGGGCCGGGCCCTGGCGAACTGTCTC
CCCAGCAACAGAACCCTGTGGAGGCTGGAGCTGGCTGGGAACAGCATCCCCAGCGACGTC
CTCAGAGCCGTGGGTACGGGTGGCTTGCACTCCGGGAGAGCCAGGCCCGCGCCCACATCC
TCAGCAAGGAGGTGCAACACCTTCGGGAAGAGAAGTCCAAGCAGTTCCTGGACCTGATGA
GGAGAGAGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGACGAGGGAGCCACGCTGTTGCTGCAGGGACTGTGTGTCAACACCGTGGTGCGGTTT
CTGGATCTAAAGGGCAATAACCTTTGCGCTGCAGGAGCTGAGGCTCTGGGAAAACTCCTC
CGACAGAACAAGTCCATCCAGAGGTGAGGTGGCGGTCCCAGCCTTTGCTCCTTCTCAGCA
TGGCTCTGGGTTGGCTCCAGAGGACGCGGTGCACTCCTGCGCGCCAGTCTTCCTGGGCTG
CGCATGGACGGGGCCTCACCCTGGAGTGGAACAGCCTGGGCCCGTGGGAAGACGCCTTCG
CCACTTTCTGCGGGGCCCTGGCAGCCAACAGTACCCTGCGGCAGCTGGACCTCCGCAACA
ACCAGATCAGCCACAAGGGCGCCGAGGAGCTGGCCCTGGCCCTGAGGAGCAACGCCAGCC
TCCAGCAGCTGGGTGAGGCCGCCTGGCTCCGGGCCCTGGTCCTCAGACCAGGCTGGGCGG
TCTTGGTCGGGGCAAGGGCTTCATCTCTGGCCCCTCAGCCCTGGCTGCTTCCTTTGGTCT
GTCCCAGAGCGGAGGGTGTGGGGAACGAGGGCCCCCGACACAGGCAGTGCTGCCCCGCAA
AGGAAGTGTCTCAGGCTGCGCCAGCCCCCAGCCCCACCCTGTGCGACCCCAGGTTTCTTT
CCAGACCTGCGCTGGAATCACATCGGCCTCCTGGGGGGCCGGGCCCTGGCGAACTGTCTC
CCCAGCAACAGAACCCTGTGGAGGCTGGAGCTGGCTGGGAACAGCATCCCCAGCGACGTC
CTCAGAGCCGTGGGTACGGGTGGCTTGCACTCCGGGAGAGCCAGGCCCGCGCCCACATCC
TCAGCAAGGAGGTGCAACACCTTCGGGAAGAGAAGTCCAAGCAGTTCCTGGACCTGATGA
GGAGAGAGAACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               368-485, - strand, RNAz p=0.72415
               

               
               676-795, - strand, RNAz p=0.541507

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-485, - strand, RNAz p=0.72415
               

               
               676-795, - strand, RNAz p=0.541507

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               385-485, - strand, RNAmicro p=0.9902

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               385-485, - strand, RNAmicro p=0.9902

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               253-485, gnl|bosTau2|chr19 (45652404-45652637)
               

               
               253-485, gnl|Hg17|chr17 (77576164-77576371)
               

               
               253-485, gnl|Mm7|chr11 (120824465-120824661)
               


               
               506-800, gnl|bosTau2|chr19 (45652633-45652938)
               

               
               506-800, gnl|Hg17|chr17 (77576369-77576677)
               

               
               506-800, gnl|Mm7|chr11 (120824723-120824986)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               253-485, gnl|bosTau2|chr19 (45652404-45652637)
               

               
               253-485, gnl|Hg17|chr17 (77576164-77576371)
               

               
               253-485, gnl|Mm7|chr11 (120824465-120824661)
               


               
               506-800, gnl|bosTau2|chr19 (45652633-45652938)
               

               
               506-800, gnl|Hg17|chr17 (77576369-77576677)
               

               
               506-800, gnl|Mm7|chr11 (120824723-120824986)

	368-485, - strand, RNAz p=0.72415
	676-795, - strand, RNAz p=0.541507

	253-485, gnl\|bosTau2\|chr19 (45652404-45652637)
	253-485, gnl\|Hg17\|chr17 (77576164-77576371)
	253-485, gnl\|Mm7\|chr11 (120824465-120824661)

	506-800, gnl\|bosTau2\|chr19 (45652633-45652938)
	506-800, gnl\|Hg17\|chr17 (77576369-77576677)
	506-800, gnl\|Mm7\|chr11 (120824723-120824986)