Non-Coding RNA Search

Ss1.1-Mixn-0021f23.5

Sequence:


               
               TTTTTTTAAACTGTATTAAGGCACTGAGACAGAAGGTTTATGCTTTTGATTTTAGTTTAG
CTTCTCACCCCTTTATAGCCCATAGATTTTTAACACCTGCTTAGAAGAAAATTCCCATAA
TATGGGATGCTGCACTCCTGGCCTGGTGTGCCCTTGTTGTGTCCTGTCCTGTAGTGGCTC
CTTGGTCTTTATGTAAAAGATCCACAGTGACTTGTGTGGACAAGAGTCCAGTATGGCTGC
CAGTATAGAGAAAGCACAGTGCGTGAGAATTGAAGCAAGAGAGTGTTGAAGGAAGTAGTT
CATATTTCCCGCTCCTTTCTCTTGCTGATTAACTTAGGACTAGAATGGTTACTATATTGG
GGAAAAAATAACAAGGTAATATTCCCTGAGAAATCCTTTAAACCTGGGATTGAAGAAGGA
CTTGAGAATTAGTTGTATTGGAGGTTAAACGAAATCATTGACCTAAGAAATTGCTTTTCT
TTGCTGAATTCAGATTCTTCAAGAAAAACTGAATGAAATGAGCTGTGAACTAAAGTCTGC
TCAGCAGTCATCTCAGAAGCAAGATAGTACAATTCAAAGCTTCAAGGAAACTCTGAAAAG
CAGGGAAAGCGAGGTAAAATGTTTGGCCATCAAGGACCTATGAGGAAACATTTTTTTCCC
ATCAAAGTAGAAAGAATTCTGTAATTTATAGAAATGGATATTGTCAGACTAACAGAAAAA
TCATAGTGTCATCTGAATGGGTATTTTGGAGTAGTCTTGATGCTAAAATCTATACAGATG
AGATAATGGAATGTTTATTTAGTTGGCTAATATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTAAACTGTATTAAGGCACTGAGACAGAAGGTTTATGCTTTTGATTTTAGTTTAG
CTTCTCACCCCTTTATAGCCCATAGATTTTTAACACCTGCTTAGAAGAAAATTCCCATAA
TATGGGATGCTGCACTCCTGGCCTGGTGTGCCCTTGTTGTGTCCTGTCCTGTAGTGGCTC
CTTGGTCTTTATGTAAAAGATCCACAGTGACTTGTGTGGACAAGAGTCCAGTATGGCTGC
CAGTATAGAGAAAGCACAGTGCGTGAGAATTGAAGCAAGAGAGTGTTGAAGGAAGTAGTT
CATATTTCCCGCTCCTTTCTCTTGCTGATTAACTTAGGACTAGAATGGTTACTATATTGG
GGAAAAAATAACAAGGTAATATTCCCTGAGAAATCCTTTAAACCTGGGATTGAAGAAGGA
CTTGAGAATTAGTTGTATTGGAGGTTAAACGAAATCATTGACCTAAGAAATTGCTTTTCT
TTGCTGAATTCAGATTCTTCAAGAAAAACTGAATGAAATGAGCTGTGAACTAAAGTCTGC
TCAGCAGTCATCTCAGAAGCAAGATAGTACAATTCAAAGCTTCAAGGAAACTCTGAAAAG
CAGGGAAAGCGAGGTAAAATGTTTGGCCATCAAGGACCTATGAGGAAACATTTTTTTCCC
ATCAAAGTAGAAAGAATTCTGTAATTTATAGAAATGGATATTGTCAGACTAACAGAAAAA
TCATAGTGTCATCTGAATGGGTATTTTGGAGTAGTCTTGATGCTAAAATCTATACAGATG
AGATAATGGAATGTTTATTTAGTTGGCTAATATGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               464-623, + strand, RNAz p=0.848435

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-623, + strand, RNAz p=0.848435

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-816, gnl|bosTau2|chr3 (18012310-18011491)
               

               
               4-816, gnl|Hg17|chr1 (142412191-142411348)
               

               
               4-816, gnl|Mm7|chr3 (97629577-97628619)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-816, gnl|bosTau2|chr3 (18012310-18011491)
               

               
               4-816, gnl|Hg17|chr1 (142412191-142411348)
               

               
               4-816, gnl|Mm7|chr3 (97629577-97628619)

	4-816, gnl\|bosTau2\|chr3 (18012310-18011491)
	4-816, gnl\|Hg17\|chr1 (142412191-142411348)
	4-816, gnl\|Mm7\|chr3 (97629577-97628619)