Non-Coding RNA Search

Ss1.1-Mixn-0021h07.5

Sequence:


               
               GGGGTTTACTGTGATGGGGTGGGTGGGAGATAGGGCTCCCAGGAAACTTCGTTGTGGCTT
CTGCATAGTTACTCTCTTAGGAAGTGAGACAGACACTATGTTCCAGCCCCGTGGGCTTGG
GAAGGCTGCAGCCAGGCAGTCACTGCTGCTGGCCAGGGTCTGATCTCTAGGGAAGCAGCG
TGCCTTAGGCCACTGAGCCTTTTAGGTGAAAGCATTGTTCCCAGACCTGAGTTTAGTACC
TACTGTCCCCACACGTCCTGGGCCAAGAGAGGGGTCTGGGCACAGCCTTTGGAGGCTCTC
CTGGGACTCTCTGCTCAGGAAAGAAACATGACCAAGCCGCTGAGATCAGAACAGCTCCAG
GAGAAGCTGAGACAAGGAGTGAGGAGGGGAGATGGGCCAAAAGGGAAGGGGGGGGGTCCG
AGAGGTGAAGAAAACACTTTCATTTGTGAACCAGGCCAGGAAGTAGAGCAGAAAAGGCCA
TGCCATTTTTAGAGCTCCTGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTTACTGTGATGGGGTGGGTGGGAGATAGGGCTCCCAGGAAACTTCGTTGTGGCTT
CTGCATAGTTACTCTCTTAGGAAGTGAGACAGACACTATGTTCCAGCCCCGTGGGCTTGG
GAAGGCTGCAGCCAGGCAGTCACTGCTGCTGGCCAGGGTCTGATCTCTAGGGAAGCAGCG
TGCCTTAGGCCACTGAGCCTTTTAGGTGAAAGCATTGTTCCCAGACCTGAGTTTAGTACC
TACTGTCCCCACACGTCCTGGGCCAAGAGAGGGGTCTGGGCACAGCCTTTGGAGGCTCTC
CTGGGACTCTCTGCTCAGGAAAGAAACATGACCAAGCCGCTGAGATCAGAACAGCTCCAG
GAGAAGCTGAGACAAGGAGTGAGGAGGGGAGATGGGCCAAAAGGGAAGGGGGGGGGTCCG
AGAGGTGAAGAAAACACTTTCATTTGTGAACCAGGCCAGGAAGTAGAGCAGAAAAGGCCA
TGCCATTTTTAGAGCTCCTGGACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               54-211, - strand, RNAz p=0.977503
               

               
               292-397, + strand, RNAz p=0.900875

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-211, - strand, RNAz p=0.977503
               

               
               292-397, + strand, RNAz p=0.900875

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014571, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014571, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-502, gnl|bosTau2|chr3 (73025871-73025396)
               

               
               18-502, gnl|Hg17|chr1 (39760731-39761225)
               

               
               18-502, gnl|Mm7|chr4 (122691779-122691322)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-502, gnl|bosTau2|chr3 (73025871-73025396)
               

               
               18-502, gnl|Hg17|chr1 (39760731-39761225)
               

               
               18-502, gnl|Mm7|chr4 (122691779-122691322)

	54-211, - strand, RNAz p=0.977503
	292-397, + strand, RNAz p=0.900875

	18-502, gnl\|bosTau2\|chr3 (73025871-73025396)
	18-502, gnl\|Hg17\|chr1 (39760731-39761225)
	18-502, gnl\|Mm7\|chr4 (122691779-122691322)