Non-Coding RNA Search

Ss1.1-Mixn-0022a03.5

Sequence:


               
               CAGCTTCTTTTCAGTTGCTTTTAAAAGATCGAAAGCTCATGGTGCAGATTGTTATTTCCA
GTGCTGGGGCTGGAGGCCTGGCAGAATGGGTGCTGATGGAGCTACAGGGGGAGATCGAGG
CTCGCTACAGCACTGGATTAGCTGGAAACCTCCTGGGAGACCTACATTACACCACTGAGG
GAATCCCTGTGCTGATCGTGGGGCATCATATCCTGTATGGGAAAATCATCCACCTGGAGA
AACCATTTGCAGTCCTTGTTAAACATACTCCTGGGGAGCAGGATTGTGATGAGCTTGGCT
GTGAGAGTGGCACTCGGTACCTGGTGACAGCACTCATCAAAAACAAGATCCTTTTCAAAA
CCCGCCCCAAGCCCATTATCACCAACGTCCCCAAGAAAGTATGAAAGAGCCCCGGATTTT
CCCTAGAGAGCGGCCAACTCCTTGGACTCGTGCTCCGCTGCCACCTCGAGGACGGCTCGA
CAGTTCCCTGGGACCACAAGGGGGTCCTGTTTTAAACACAGGCCACCCACTGGGTATGAA
CTCTGATTCTTTCCTTATGGCAACTGGTTCTCTTGGTGGAAATTTGGCTCCATTTCCGAG
GAACCCGTCTTCTTTTCCAACTTCTTCAGGCTCATTGGCTTCAAATCCAGCACCTTTCCC
TGCTGGTACTCGTGACCCAAGCATGGCTTCTTTTCCAAGAGGAATGAATCCCACTGGCAC
AGGTGCAGTTTCTTTCCCACGGCCTGGTGGCCTCTTGGGTCCAGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTTCTTTTCAGTTGCTTTTAAAAGATCGAAAGCTCATGGTGCAGATTGTTATTTCCA
GTGCTGGGGCTGGAGGCCTGGCAGAATGGGTGCTGATGGAGCTACAGGGGGAGATCGAGG
CTCGCTACAGCACTGGATTAGCTGGAAACCTCCTGGGAGACCTACATTACACCACTGAGG
GAATCCCTGTGCTGATCGTGGGGCATCATATCCTGTATGGGAAAATCATCCACCTGGAGA
AACCATTTGCAGTCCTTGTTAAACATACTCCTGGGGAGCAGGATTGTGATGAGCTTGGCT
GTGAGAGTGGCACTCGGTACCTGGTGACAGCACTCATCAAAAACAAGATCCTTTTCAAAA
CCCGCCCCAAGCCCATTATCACCAACGTCCCCAAGAAAGTATGAAAGAGCCCCGGATTTT
CCCTAGAGAGCGGCCAACTCCTTGGACTCGTGCTCCGCTGCCACCTCGAGGACGGCTCGA
CAGTTCCCTGGGACCACAAGGGGGTCCTGTTTTAAACACAGGCCACCCACTGGGTATGAA
CTCTGATTCTTTCCTTATGGCAACTGGTTCTCTTGGTGGAAATTTGGCTCCATTTCCGAG
GAACCCGTCTTCTTTTCCAACTTCTTCAGGCTCATTGGCTTCAAATCCAGCACCTTTCCC
TGCTGGTACTCGTGACCCAAGCATGGCTTCTTTTCCAAGAGGAATGAATCCCACTGGCAC
AGGTGCAGTTTCTTTCCCACGGCCTGGTGGCCTCTTGGGTCCAGGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55644103|ref|XP_511061.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644103|ref|XP_511061.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               257-376, - strand, RNAz p=0.906121
               

               
               417-696, - strand, RNAz p=0.946719

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-376, - strand, RNAz p=0.906121
               

               
               417-696, - strand, RNAz p=0.946719

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               178-768, gnl|bosTau2|chr18 (13998445-13999035)
               

               
               178-768, gnl|Hg17|chr16 (67712055-67711459)
               

               
               178-768, gnl|Mm7|chr8 (105486665-105486093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-768, gnl|bosTau2|chr18 (13998445-13999035)
               

               
               178-768, gnl|Hg17|chr16 (67712055-67711459)
               

               
               178-768, gnl|Mm7|chr8 (105486665-105486093)

	257-376, - strand, RNAz p=0.906121
	417-696, - strand, RNAz p=0.946719

	178-768, gnl\|bosTau2\|chr18 (13998445-13999035)
	178-768, gnl\|Hg17\|chr16 (67712055-67711459)
	178-768, gnl\|Mm7\|chr8 (105486665-105486093)