Non-Coding RNA Search

Ss1.1-Mixn-0022g19.5

Sequence:


               
               TACCCGCCCACCTTGGACACGCCCCTGCCCTACCCTGGAGTTTCGATACAAGAAGAGAGT
TTATGCCCAGAACCTCATTGATGATAAGCAGTTTGCAAAGCTTCACACAAAGGCGAACCT
GAAGAAGTTCATGGAATATGTGCAGCTGCACAGCACGGACAAGGTGGCCCGCCTGCTGGA
CAAGGGGCTGGACCCCAATTTCCACGATCCTGACTCAGGAGAGTGTCCCCTGAGTCTCGC
GGCCCAGCTGGACGATGCCGCGGACCTGCTGAAGGTGCTGCGGAACGGTGGTGCTCACCT
GGACTTCCGCACTCGCGACGGCCTCACCGCGGTGCACTGCGCCACCCGCCAGCGGAATGC
GGCGGCTTTGACGACCCTGCTGGACCTGGGTGCCTCACCTGACTACAAGGACAGCCGCGG
CCTGACGCCCCTGTACCACAGCGCCCTGGGTGGGGGGGACGCCCTCTGCTGTGAGCTGCT
TCTGCACGACCATGCTCAGCTGGGGACCACGGATGAGAACGGCTGGCAGGAGGTCCACCA
GGCCTGCCGCTTTGGGCACGTGCAGCACCTGGAGCACCTGCTGTTCTACGGAGCCGACAT
GGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACATCTGCGCCCTCTACAACCAGGA
GAGCTGTGCCCGTGTCCTGCTTTTCCGTGGAGCCAACAAGGATGTCCGCAACTACAACAG
CCAGACAGCCTTCCAGGTGGCCATCATAGCAGGGAACTTTGAGCTTGCGGAGGTCATCAA
GACCCACAAAGATTCGGATGTTGTACCATTCAGGGAAACCCCCAGCTATGCGAAGCGGCG
TTGTGGGGGTTGTTGGGGCCCAACAGTGCAGGGGTCTGTGGGGATGTTACAAGGGAGCCC
CCTTCCCCTGAGCCTCTTCCTCCAGCTCTCCCAGTACAGCTGGGAGTAGTCCCAGGGGTC
CATTCGTGGCCCCTGCAGGTATGGGGACTATGCTGAGGGAAGGGCCTGTGTGGCATGGAC
AGAGGGTTCAGGGTCAAGGGCATGGTCAGTTTAGGGCTGTGGGTGGGGTTTAGGGTCAGG
TCAGTGTCAAGGGTATGGTTATAATGGTTACGGCTGTGGGTTGGGGCCAGTGCTGGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCCGCCCACCTTGGACACGCCCCTGCCCTACCCTGGAGTTTCGATACAAGAAGAGAGT
TTATGCCCAGAACCTCATTGATGATAAGCAGTTTGCAAAGCTTCACACAAAGGCGAACCT
GAAGAAGTTCATGGAATATGTGCAGCTGCACAGCACGGACAAGGTGGCCCGCCTGCTGGA
CAAGGGGCTGGACCCCAATTTCCACGATCCTGACTCAGGAGAGTGTCCCCTGAGTCTCGC
GGCCCAGCTGGACGATGCCGCGGACCTGCTGAAGGTGCTGCGGAACGGTGGTGCTCACCT
GGACTTCCGCACTCGCGACGGCCTCACCGCGGTGCACTGCGCCACCCGCCAGCGGAATGC
GGCGGCTTTGACGACCCTGCTGGACCTGGGTGCCTCACCTGACTACAAGGACAGCCGCGG
CCTGACGCCCCTGTACCACAGCGCCCTGGGTGGGGGGGACGCCCTCTGCTGTGAGCTGCT
TCTGCACGACCATGCTCAGCTGGGGACCACGGATGAGAACGGCTGGCAGGAGGTCCACCA
GGCCTGCCGCTTTGGGCACGTGCAGCACCTGGAGCACCTGCTGTTCTACGGAGCCGACAT
GGGGGCCCAGAACGCCTCGGGGAACACAGCCCTGCACATCTGCGCCCTCTACAACCAGGA
GAGCTGTGCCCGTGTCCTGCTTTTCCGTGGAGCCAACAAGGATGTCCGCAACTACAACAG
CCAGACAGCCTTCCAGGTGGCCATCATAGCAGGGAACTTTGAGCTTGCGGAGGTCATCAA
GACCCACAAAGATTCGGATGTTGTACCATTCAGGGAAACCCCCAGCTATGCGAAGCGGCG
TTGTGGGGGTTGTTGGGGCCCAACAGTGCAGGGGTCTGTGGGGATGTTACAAGGGAGCCC
CCTTCCCCTGAGCCTCTTCCTCCAGCTCTCCCAGTACAGCTGGGAGTAGTCCCAGGGGTC
CATTCGTGGCCCCTGCAGGTATGGGGACTATGCTGAGGGAAGGGCCTGTGTGGCATGGAC
AGAGGGTTCAGGGTCAAGGGCATGGTCAGTTTAGGGCTGTGGGTGGGGTTTAGGGTCAGG
TCAGTGTCAAGGGTATGGTTATAATGGTTACGGCTGTGGGTTGGGGCCAGTGCTGGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843665|ref|XP_589942.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843665|ref|XP_589942.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               871-987, + strand, RNAz p=0.96729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               871-987, + strand, RNAz p=0.96729

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               220-373, gnl|bosTau2|chr5 (75630822-75630669)
               

               
               220-373, gnl|Hg17|chr22 (49407339-49407492)
               

               
               220-373, gnl|Mm7|chr15 (89586179-89586332)
               


               
               539-674, gnl|bosTau2|chr29 (42719726-42719587)
               

               
               539-674, gnl|Hg17|chr22 (49407881-49408011)
               

               
               539-674, gnl|Mm7|chr7 (140508649-140508788)
               


               
               733-987, gnl|bosTau2|chr5 (75629070-75628816)
               

               
               733-987, gnl|Hg17|chr22 (49413153-49413382)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-373, gnl|bosTau2|chr5 (75630822-75630669)
               

               
               220-373, gnl|Hg17|chr22 (49407339-49407492)
               

               
               220-373, gnl|Mm7|chr15 (89586179-89586332)
               


               
               539-674, gnl|bosTau2|chr29 (42719726-42719587)
               

               
               539-674, gnl|Hg17|chr22 (49407881-49408011)
               

               
               539-674, gnl|Mm7|chr7 (140508649-140508788)
               


               
               733-987, gnl|bosTau2|chr5 (75629070-75628816)
               

               
               733-987, gnl|Hg17|chr22 (49413153-49413382)

	220-373, gnl\|bosTau2\|chr5 (75630822-75630669)
	220-373, gnl\|Hg17\|chr22 (49407339-49407492)
	220-373, gnl\|Mm7\|chr15 (89586179-89586332)

	539-674, gnl\|bosTau2\|chr29 (42719726-42719587)
	539-674, gnl\|Hg17\|chr22 (49407881-49408011)
	539-674, gnl\|Mm7\|chr7 (140508649-140508788)

	733-987, gnl\|bosTau2\|chr5 (75629070-75628816)
	733-987, gnl\|Hg17\|chr22 (49413153-49413382)