Non-Coding RNA Search

Ss1.1-Mixn-0023h22.5

Sequence:


               
               GAGCGGAGAAGCTGAGCCGACACTGCCACCTGATCCCATCCAGGCGCGGAGAAGCGAGCG
ACCAGCACTCTGCTCGCAGGTCCCCCAGCGCCCTCGGCCGGAGAGCGGATTTCGCGGCAA
GAATTGGGAAGTAGCGGCGACCACCCCAGCCCGGGTCAGGCGGAGCTCGCTTAGCGCCTC
ACACAGGAACACTGGCCCTGCTACCGGAGCCCCAGGAGCCCCCATGAGCGCCGGCGAAGG
GAGTCCTGGATAGCAAGGCCCTGGCTGGTCCAGGATTGGGTTACCCCATCATGCCACCCA
TCCTCCAGCGCCTGCAGCAGGCCACCAAGATGATGAGCCGCAGGAAAATCCTGCTGCTGG
TGCTGGGATGCAGCACCTTAAGCCTCCTCATCCACCAGGGGGCACAGCTCAGCTGGACTC
TCCACCGCGCCCCAAGCACATGACCGTGGCCTTCCTGAAGACGCACAAGACGGCGGGCAC
GACAGTGCAGAACATTCTGTTCCGCTTCGCCGAGCGCCACAACCTGACCGTCGCCCTGCC
GCACCCGAGCTGCGAGCACCAGTTCTGCTACCCGCGCAACTTCTCCGCGCACTTCGTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGAGAAGCTGAGCCGACACTGCCACCTGATCCCATCCAGGCGCGGAGAAGCGAGCG
ACCAGCACTCTGCTCGCAGGTCCCCCAGCGCCCTCGGCCGGAGAGCGGATTTCGCGGCAA
GAATTGGGAAGTAGCGGCGACCACCCCAGCCCGGGTCAGGCGGAGCTCGCTTAGCGCCTC
ACACAGGAACACTGGCCCTGCTACCGGAGCCCCAGGAGCCCCCATGAGCGCCGGCGAAGG
GAGTCCTGGATAGCAAGGCCCTGGCTGGTCCAGGATTGGGTTACCCCATCATGCCACCCA
TCCTCCAGCGCCTGCAGCAGGCCACCAAGATGATGAGCCGCAGGAAAATCCTGCTGCTGG
TGCTGGGATGCAGCACCTTAAGCCTCCTCATCCACCAGGGGGCACAGCTCAGCTGGACTC
TCCACCGCGCCCCAAGCACATGACCGTGGCCTTCCTGAAGACGCACAAGACGGCGGGCAC
GACAGTGCAGAACATTCTGTTCCGCTTCGCCGAGCGCCACAACCTGACCGTCGCCCTGCC
GCACCCGAGCTGCGAGCACCAGTTCTGCTACCCGCGCAACTTCTCCGCGCACTTCGTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               261-416, - strand, RNAz p=0.978245

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-416, - strand, RNAz p=0.978245

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               292-375, + strand, RNAmicro p=0.992712
               

               
               277-384, - strand, RNAmicro p=0.985757

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               292-375, + strand, RNAmicro p=0.992712
               

               
               277-384, - strand, RNAmicro p=0.985757

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               182-416, gnl|bosTau2|chr29 (38872766-38872536)
               

               
               182-416, gnl|Hg17|chr11 (65569570-65569337)
               

               
               182-416, gnl|Mm7|chr19 (5197246-5197478)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-416, gnl|bosTau2|chr29 (38872766-38872536)
               

               
               182-416, gnl|Hg17|chr11 (65569570-65569337)
               

               
               182-416, gnl|Mm7|chr19 (5197246-5197478)

	292-375, + strand, RNAmicro p=0.992712
	277-384, - strand, RNAmicro p=0.985757

	182-416, gnl\|bosTau2\|chr29 (38872766-38872536)
	182-416, gnl\|Hg17\|chr11 (65569570-65569337)
	182-416, gnl\|Mm7\|chr19 (5197246-5197478)