Non-Coding RNA Search

Ss1.1-Mixn-0024a20.5

Sequence:


               
               GGGGTTGGTTAGGATGGCAACTAAATAACGACATAGGAGTTGTAAAAAGTCCCCGGTCTG
TATTTTTAAAACTGCTGGCAATGGTTGTGGAAGGATCTCGAAGCAGGCTGGGGGGCTCTG
GCAATTGAGAGTACTGTCTCCTGTTAACCTTCCACCTTCACCCGTCCCCCGCCACGATAA
ATAAAGCAGGGCCAGTTCAAGCAGCTATTTTAAATGGTCCCTGGCAGAGCTGTTCTTGTT
TAATCAGTCTTTCTCCCTGAAGAGTGGAATATTACTGAGATGCAGATGGTTCCCTTCAGA
CTCAGTCTTGATGTTTGCTCTGGGACTGGAAAATTTTTAGTAGAATTTTACAGCTGGAAG
GAGGAACACTGAGTTGGGTCACCTCATTTTACAGATGGGGATTTGGGGGCCTGGGGAGTT
TGTGATTTGCCTAAAACCAGACACAGCTAATTAGTACCTGAACCTATTCTTGAATCGAGG
ATTTCAACTTCACTGCACCTCTTTTTCTCCCCCGCTACCTCCCACCCCACCCTCACCCAG
TCCTTCTGTCAGCCCCCACAACTGATGTTTTTGCTAGGGCTGGGGGAGGACCTAGCCCCT
GTCTGTCATCTGAGATCTGTCTCCCACTGCGGAGCTGCTGAAATGAATTTTAAGAGTCCT
AAAGTGCTTTAAATAATTGTCAGTGCAGCTAAACCAGTCGTCTCCATCCGCCTTACACAT
GGATGATACTGTTAGAACGGCTGTATGTCACTTGGCTAATTCTCCCTGAAGCTGGGGAAA
GAGATTTGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTGGTTAGGATGGCAACTAAATAACGACATAGGAGTTGTAAAAAGTCCCCGGTCTG
TATTTTTAAAACTGCTGGCAATGGTTGTGGAAGGATCTCGAAGCAGGCTGGGGGGCTCTG
GCAATTGAGAGTACTGTCTCCTGTTAACCTTCCACCTTCACCCGTCCCCCGCCACGATAA
ATAAAGCAGGGCCAGTTCAAGCAGCTATTTTAAATGGTCCCTGGCAGAGCTGTTCTTGTT
TAATCAGTCTTTCTCCCTGAAGAGTGGAATATTACTGAGATGCAGATGGTTCCCTTCAGA
CTCAGTCTTGATGTTTGCTCTGGGACTGGAAAATTTTTAGTAGAATTTTACAGCTGGAAG
GAGGAACACTGAGTTGGGTCACCTCATTTTACAGATGGGGATTTGGGGGCCTGGGGAGTT
TGTGATTTGCCTAAAACCAGACACAGCTAATTAGTACCTGAACCTATTCTTGAATCGAGG
ATTTCAACTTCACTGCACCTCTTTTTCTCCCCCGCTACCTCCCACCCCACCCTCACCCAG
TCCTTCTGTCAGCCCCCACAACTGATGTTTTTGCTAGGGCTGGGGGAGGACCTAGCCCCT
GTCTGTCATCTGAGATCTGTCTCCCACTGCGGAGCTGCTGAAATGAATTTTAAGAGTCCT
AAAGTGCTTTAAATAATTGTCAGTGCAGCTAAACCAGTCGTCTCCATCCGCCTTACACAT
GGATGATACTGTTAGAACGGCTGTATGTCACTTGGCTAATTCTCCCTGAAGCTGGGGAAA
GAGATTTGAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               492-598, - strand, RNAz p=0.998999

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-598, - strand, RNAz p=0.998999

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               77-692, gnl|bosTau2|chr29 (38437253-38437890)
               

               
               77-692, gnl|canFam2|chr18 (54735885-54735495)
               

               
               77-692, gnl|dasNov1|scaffold_18113 (14591-15060)
               

               
               77-692, gnl|hg17|chr11 (65020319-65020684)
               

               
               77-692, gnl|Hg17|chr11 (65020912-65020318)
               

               
               77-692, gnl|loxAfr1|scaffold_9427 (61371-61784)
               

               
               77-692, gnl|mm7|chr19 (5699656-5699374)
               

               
               77-692, gnl|panTro1|chr9 (66265528-66265893)
               

               
               77-692, gnl|rheMac2|chr14 (8935079-8934729)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-692, gnl|bosTau2|chr29 (38437253-38437890)
               

               
               77-692, gnl|canFam2|chr18 (54735885-54735495)
               

               
               77-692, gnl|dasNov1|scaffold_18113 (14591-15060)
               

               
               77-692, gnl|hg17|chr11 (65020319-65020684)
               

               
               77-692, gnl|Hg17|chr11 (65020912-65020318)
               

               
               77-692, gnl|loxAfr1|scaffold_9427 (61371-61784)
               

               
               77-692, gnl|mm7|chr19 (5699656-5699374)
               

               
               77-692, gnl|panTro1|chr9 (66265528-66265893)
               

               
               77-692, gnl|rheMac2|chr14 (8935079-8934729)

	77-692, gnl\|bosTau2\|chr29 (38437253-38437890)
	77-692, gnl\|canFam2\|chr18 (54735885-54735495)
	77-692, gnl\|dasNov1\|scaffold_18113 (14591-15060)
	77-692, gnl\|hg17\|chr11 (65020319-65020684)
	77-692, gnl\|Hg17\|chr11 (65020912-65020318)
	77-692, gnl\|loxAfr1\|scaffold_9427 (61371-61784)
	77-692, gnl\|mm7\|chr19 (5699656-5699374)
	77-692, gnl\|panTro1\|chr9 (66265528-66265893)
	77-692, gnl\|rheMac2\|chr14 (8935079-8934729)