Non-Coding RNA Search

Ss1.1-Mixn-0024k11.5

Sequence:


               
               GTAGACTGTTGAATCACTGCGTAACCAACCAACCCNTAGGCCAGCACTCAAGAACTAGAA
ACTTCAGAAATAAAGCTGGCGGCTTCTTTCGAAGACTCTTGCAGCACTAATGCCAGAAAG
CAGACTCTGACACCACCTCCCAAGGTATCCTCAGAAGTTGCTTTTACCAAAGCCCAAAGT
GGCCTTGGTAAAACTCCCCGTTATGCAGTTTTCTCCTGTGCCTGTCTTTGTGCCTACGGC
AGACTCCTCAGCCCAGCCTGTGGTGTTGGGTGTCGATCAGCAGGGCGCTGCCCCCAGTGC
TGTGCACTTACTGCCCTTGTCCATAGGGACCCTGATCCTCGGCCTGGATTCAGAGGCCTG
CTCTCTCAAGGAGAGCCTCCCTCTTTCAAAAATTGTAAATCCTGTTGCTGTTGAGCCAGT
TAGCACAGGTGTTCAAGTGAACTTGGGTAAAAGTCTATCGAACCCTTTACAAGAACTAGG
GAGCCCCTGTCAGAAGAACAGCATCTCTTCAATCAACGTACAGACAGATCTGTCTTACAC
CACACAACCCTTTATACCTTCTCCGCAGTGGGCTAGCCCTGATTCCTCTGTATCGTCTTG
TTCTCAAACTGATTTGACATTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGACTGTTGAATCACTGCGTAACCAACCAACCCNTAGGCCAGCACTCAAGAACTAGAA
ACTTCAGAAATAAAGCTGGCGGCTTCTTTCGAAGACTCTTGCAGCACTAATGCCAGAAAG
CAGACTCTGACACCACCTCCCAAGGTATCCTCAGAAGTTGCTTTTACCAAAGCCCAAAGT
GGCCTTGGTAAAACTCCCCGTTATGCAGTTTTCTCCTGTGCCTGTCTTTGTGCCTACGGC
AGACTCCTCAGCCCAGCCTGTGGTGTTGGGTGTCGATCAGCAGGGCGCTGCCCCCAGTGC
TGTGCACTTACTGCCCTTGTCCATAGGGACCCTGATCCTCGGCCTGGATTCAGAGGCCTG
CTCTCTCAAGGAGAGCCTCCCTCTTTCAAAAATTGTAAATCCTGTTGCTGTTGAGCCAGT
TAGCACAGGTGTTCAAGTGAACTTGGGTAAAAGTCTATCGAACCCTTTACAAGAACTAGG
GAGCCCCTGTCAGAAGAACAGCATCTCTTCAATCAACGTACAGACAGATCTGTCTTACAC
CACACAACCCTTTATACCTTCTCCGCAGTGGGCTAGCCCTGATTCCTCTGTATCGTCTTG
TTCTCAAACTGATTTGACATTTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-236, - strand, RNAz p=0.99133
               

               
               277-472, + strand, RNAz p=0.999459

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-236, - strand, RNAz p=0.99133
               

               
               277-472, + strand, RNAz p=0.999459

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               281-455, CES001593 Bos taurus skin cDNA library Bos taurus cDNA clone 
(gb|CF768755.1|), blast E-value=0, identity=93.71% 
               

               
               281-455, 4060504 BARC 8BOV Bos taurus cDNA clone 8BOV_14G18 5', mRNA 
(gb|CK835823.1|), blast E-value=0, identity=93.71% 
               

               
               299-451, nag01e06.y1 Rabbit eye minus lens and cornea. Unnormalized (nag) 
(gb|DN887075.1|), blast E-value=0, identity=91.5% 
               

               
               281-472, LB00490.CR_J09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT850256.1|), 
blast E-value=0, identity=90.1% 
               

               
               299-472, 185777 Pigtailed macaque testis library Macaca nemestrina cDNA 5', 
(gb|DY748652.1|), blast E-value=4.99983e-42, identity=87.93% 
               

               
               299-472, 296527 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB522637.1|), blast E-value=1.96182e-44, identity=88.51%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               281-455, CES001593 Bos taurus skin cDNA library Bos taurus cDNA clone 
(gb|CF768755.1|), blast E-value=0, identity=93.71% 
               

               
               281-455, 4060504 BARC 8BOV Bos taurus cDNA clone 8BOV_14G18 5', mRNA 
(gb|CK835823.1|), blast E-value=0, identity=93.71% 
               

               
               299-451, nag01e06.y1 Rabbit eye minus lens and cornea. Unnormalized (nag) 
(gb|DN887075.1|), blast E-value=0, identity=91.5% 
               

               
               281-472, LB00490.CR_J09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT850256.1|), 
blast E-value=0, identity=90.1% 
               

               
               299-472, 185777 Pigtailed macaque testis library Macaca nemestrina cDNA 5', 
(gb|DY748652.1|), blast E-value=4.99983e-42, identity=87.93% 
               

               
               299-472, 296527 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', 
(gb|EB522637.1|), blast E-value=1.96182e-44, identity=88.51%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-483, gnl|bosTau2|chr15 (8471641-8472119)
               

               
               3-483, gnl|Hg17|chr9 (95134894-95135362)
               

               
               3-483, gnl|Mm7|chr8 (115568097-115568543)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-483, gnl|bosTau2|chr15 (8471641-8472119)
               

               
               3-483, gnl|Hg17|chr9 (95134894-95135362)
               

               
               3-483, gnl|Mm7|chr8 (115568097-115568543)

	81-236, - strand, RNAz p=0.99133
	277-472, + strand, RNAz p=0.999459

	281-455, CES001593 Bos taurus skin cDNA library Bos taurus cDNA clone (gb\|CF768755.1\|), blast E-value=0, identity=93.71%
	281-455, 4060504 BARC 8BOV Bos taurus cDNA clone 8BOV_14G18 5', mRNA (gb\|CK835823.1\|), blast E-value=0, identity=93.71%
	299-451, nag01e06.y1 Rabbit eye minus lens and cornea. Unnormalized (nag) (gb\|DN887075.1\|), blast E-value=0, identity=91.5%
	281-472, LB00490.CR_J09 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT850256.1\|), blast E-value=0, identity=90.1%
	299-472, 185777 Pigtailed macaque testis library Macaca nemestrina cDNA 5', (gb\|DY748652.1\|), blast E-value=4.99983e-42, identity=87.93%
	299-472, 296527 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb\|EB522637.1\|), blast E-value=1.96182e-44, identity=88.51%

	3-483, gnl\|bosTau2\|chr15 (8471641-8472119)
	3-483, gnl\|Hg17\|chr9 (95134894-95135362)
	3-483, gnl\|Mm7\|chr8 (115568097-115568543)