Non-Coding RNA Search

Ss1.1-Mixn-0025b23.5

Sequence:


               
               GGGCAGGCGCCCGAGGAGCTGGCACGGATCCACCTGGGATGGCCAATTAGGCCAGAGAAG
CAGGGTCTACGCGGCTGGTATTATTCAAAAGTGTTACTTCAAGGTGTATCTTTAGACCAG
GCCGGCCTCGCCGCGCGGATGCTCCCGTTGTGGCGTGGTCGGTGGGAGCCGTGGCCACGC
CTCTGGCCGACGAGCGGGGGCGCTCCGCCAGGCTGCTTGTGCTCCTGCCGTGGACGTAGG
TTCTCTCGGGCATGCCGACCGCAGTTTTTAATGGCCCCGTTGGCGAGCCCTTTCTAATGG
AGTGACTCCGTGCCTGTATAGTATTTATACAAATATTTTAGCATTGTAATATACCGTGTT
AAATCCTAGTTCTGTACAGTATATTCTGTTAAAGTATTTTTTTACAAGCTTGTACTGGAG
ACTTACACGTTCTGTTGCAGAAGTAGACGCCAGTGGCACATCTGCCCTGCCCATTGGGGT
GCCACCCCTTCGTGGGACATTGCCATGACCCCTGAAATTTCTCCATCTACCTAGTAGCTG
CTACTGCCAGAACAGCCACAATAAGCAAGACATGGTTTATGCTTTTTCTAGCATTCTGGG
AATATTGGCTTTGCAGCAAACTGCAAAGCACGACTGGAGACTGAACACCAGGACTAGAAA
CAGCAAGCAGCGTGTGTGTTGAGCTCCGGGGCTTTTTCTCTGCCCCCAGTGAGAAGGTTT
CTGGCTGGGCACACGCTTTTAGCTCGGAGTGCTGTTGCTCCAAGAGCCGGGGCTGCAGCC
TTGGAGCAGAGGAAGAAAGCAGATGCCCTAGGGGAAGAGCCTTCTGCCTGGGAACGAGGA
GGCCGGCCTGTAAAGAGGGTGCGAGGAGCATCGACGTTCGCACCCCGGAGTGGAGCCAAG
GGAGAAGCGGGCAGCTGCTACAGTGTCCCCGTGGAGCGGCACTGGCAGCCACTGTGTACA
GCCCCGCAGCCTGGCACCGGCCTGCGGCTGCCTGTCGATCTAAAAGGGATGATGCAGTGG
TGTAGCCTTTCCTGCTTGGTGTGTAACAAATGTAGCTCCATCCACTGTTTTTGCTCCCTA
CAGCAGCTCAATAAACTGGTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGGCGCCCGAGGAGCTGGCACGGATCCACCTGGGATGGCCAATTAGGCCAGAGAAG
CAGGGTCTACGCGGCTGGTATTATTCAAAAGTGTTACTTCAAGGTGTATCTTTAGACCAG
GCCGGCCTCGCCGCGCGGATGCTCCCGTTGTGGCGTGGTCGGTGGGAGCCGTGGCCACGC
CTCTGGCCGACGAGCGGGGGCGCTCCGCCAGGCTGCTTGTGCTCCTGCCGTGGACGTAGG
TTCTCTCGGGCATGCCGACCGCAGTTTTTAATGGCCCCGTTGGCGAGCCCTTTCTAATGG
AGTGACTCCGTGCCTGTATAGTATTTATACAAATATTTTAGCATTGTAATATACCGTGTT
AAATCCTAGTTCTGTACAGTATATTCTGTTAAAGTATTTTTTTACAAGCTTGTACTGGAG
ACTTACACGTTCTGTTGCAGAAGTAGACGCCAGTGGCACATCTGCCCTGCCCATTGGGGT
GCCACCCCTTCGTGGGACATTGCCATGACCCCTGAAATTTCTCCATCTACCTAGTAGCTG
CTACTGCCAGAACAGCCACAATAAGCAAGACATGGTTTATGCTTTTTCTAGCATTCTGGG
AATATTGGCTTTGCAGCAAACTGCAAAGCACGACTGGAGACTGAACACCAGGACTAGAAA
CAGCAAGCAGCGTGTGTGTTGAGCTCCGGGGCTTTTTCTCTGCCCCCAGTGAGAAGGTTT
CTGGCTGGGCACACGCTTTTAGCTCGGAGTGCTGTTGCTCCAAGAGCCGGGGCTGCAGCC
TTGGAGCAGAGGAAGAAAGCAGATGCCCTAGGGGAAGAGCCTTCTGCCTGGGAACGAGGA
GGCCGGCCTGTAAAGAGGGTGCGAGGAGCATCGACGTTCGCACCCCGGAGTGGAGCCAAG
GGAGAAGCGGGCAGCTGCTACAGTGTCCCCGTGGAGCGGCACTGGCAGCCACTGTGTACA
GCCCCGCAGCCTGGCACCGGCCTGCGGCTGCCTGTCGATCTAAAAGGGATGATGCAGTGG
TGTAGCCTTTCCTGCTTGGTGTGTAACAAATGTAGCTCCATCCACTGTTTTTGCTCCCTA
CAGCAGCTCAATAAACTGGTTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-416, - strand, RNAz p=0.642977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-416, - strand, RNAz p=0.642977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               264-657, gnl|bosTau2|chrX (9928863-9929261)
               

               
               264-657, gnl|Hg17|chrX (148384750-148384348)
               

               
               264-657, gnl|Mm7|chrX (65855013-65854640)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-657, gnl|bosTau2|chrX (9928863-9929261)
               

               
               264-657, gnl|Hg17|chrX (148384750-148384348)
               

               
               264-657, gnl|Mm7|chrX (65855013-65854640)

	264-657, gnl\|bosTau2\|chrX (9928863-9929261)
	264-657, gnl\|Hg17\|chrX (148384750-148384348)
	264-657, gnl\|Mm7\|chrX (65855013-65854640)