Ss1.1-Mixn-0025i06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACGCCATTCGCCCAGGTGCTGGCCAGTCTCCGGAGCGTTCGCAGCAACTTCTCACTCC TGACCAATGTGCCCATTCCCAGCAACAAGAGGTCCCCGCTGGGCGGCCCAACCCCTGTCT GCAAGGCCACACTGTCAGAGGAGACATGTCAGCAGTTGGCCCGGGAGACGTTGGAGGAGC TGGACTGGTGTCTGGAACAGCTGGAGACCATGCAGACCTACCGCTCTGTCAGCGAGATGG CCTCCCACAAGTTCAAGAGGATGCTAAACCGTGAACTCACACACCTGTCAGAGATGAGCA GGTCAGGAAACCAGGTCTCTGAGTACATCTCCACTACATTCCTGGATAAGCAGAATGAAG TGGACATCCCATCACCCACAATGAAGGATCATGAAAAACAGCAAGCACCACGGCAGAGAC CTTCCCAGCAGCCCCCACCCCCTGGACCACAGTTCCAGCCCATGTCACAGATCACCGGGG TGAAAAAGCTGATGCATAGCAGCAGCCTGAATGAGGATTCCAGCATTCCCCGCTTTGGGG TGAAGACCGATCAAGAGGAGCTCCTGGCCCAAGAACTGGAAAACCTGAACAAGTGGGGCC TGAACATCTTTTGTGTGTCCGATTATGCCGGGGGCCGTTCCCTCAGCTGTATCATGTACA CAATATTCCAGGAGCGGGACCTGCTGAAGAAGTTCCGCATCCCGGTGGACACGATGGTGA CCTACATGCTGACCCTAGAGGACCACTACCACCCCGATGTGGCCTACCACAACAGCCTGC ATGCGGCAGACGTGCTGCAGTCCACTCACGTGCTGCTGGCCACACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACGCCATTCGCCCAGGTGCTGGCCAGTCTCCGGAGCGTTCGCAGCAACTTCTCACTCC TGACCAATGTGCCCATTCCCAGCAACAAGAGGTCCCCGCTGGGCGGCCCAACCCCTGTCT GCAAGGCCACACTGTCAGAGGAGACATGTCAGCAGTTGGCCCGGGAGACGTTGGAGGAGC TGGACTGGTGTCTGGAACAGCTGGAGACCATGCAGACCTACCGCTCTGTCAGCGAGATGG CCTCCCACAAGTTCAAGAGGATGCTAAACCGTGAACTCACACACCTGTCAGAGATGAGCA GGTCAGGAAACCAGGTCTCTGAGTACATCTCCACTACATTCCTGGATAAGCAGAATGAAG TGGACATCCCATCACCCACAATGAAGGATCATGAAAAACAGCAAGCACCACGGCAGAGAC CTTCCCAGCAGCCCCCACCCCCTGGACCACAGTTCCAGCCCATGTCACAGATCACCGGGG TGAAAAAGCTGATGCATAGCAGCAGCCTGAATGAGGATTCCAGCATTCCCCGCTTTGGGG TGAAGACCGATCAAGAGGAGCTCCTGGCCCAAGAACTGGAAAACCTGAACAAGTGGGGCC TGAACATCTTTTGTGTGTCCGATTATGCCGGGGGCCGTTCCCTCAGCTGTATCATGTACA CAATATTCCAGGAGCGGGACCTGCTGAAGAAGTTCCGCATCCCGGTGGACACGATGGTGA CCTACATGCTGACCCTAGAGGACCACTACCACCCCGATGTGGCCTACCACAACAGCCTGC ATGCGGCAGACGTGCTGCAGTCCACTCACGTGCTGCTGGCCACACCTG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 136-251, + strand, RNAz p=0.612442 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 136-251, + strand, RNAz p=0.612442 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AJ250854, + | |
| 3' of L20969, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 13-118, gnl|bosTau2|chr7 (10830480-10830584) | |
| 13-118, gnl|Hg17|chr19 (10420751-10420855) | |
| 13-118, gnl|Mm7|chr9 (21069073-21069177) | |
| 136-251, gnl|bosTau2|chr20 (11937444-11937559) | |
| 136-251, gnl|canFam2|chr2 (48760365-48760652) | |
| 136-251, gnl|danRer3|chr8 (27857911-27858173) | |
| 136-251, gnl|dasNov1|scaffold_5822 (70254-69966) | |
| 136-251, gnl|echTel1|scaffold_296966 (12932-13225) | |
| 136-251, gnl|fr1|chrUn (273260257-273259981) | |
| 136-251, gnl|hg17|chr5 (58370413-58370701) | |
| 136-251, gnl|Hg17|chr5 (58370558-58370443) | |
| 136-251, gnl|loxAfr1|scaffold_16517 (28511-28798) | |
| 136-251, gnl|mm7|chr13 (107053522-107053228) | |
| 136-251, gnl|Mm7|chr13 (107053369-107053484) | |
| 136-251, gnl|monDom2|scaffold_27 (22519953-22520274) | |
| 136-251, gnl|oryCun1|scaffold_201045 (45298-45019) | |
| 136-251, gnl|panTro1|chr4 (57785248-57784960) | |
| 136-251, gnl|rheMac2|chr6 (56703908-56704196) | |
| 136-251, gnl|rn3|chr2 (41196003-41195709) | |
| 136-251, gnl|tetNig1|chr12 (8273461-8273726) | |
| 136-251, gnl|xenTro1|scaffold_364 (573002-573299) | |
| 328-573, gnl|bosTau2|chr7 (10836979-10837222) | |
| 328-573, gnl|Hg17|chr19 (10429536-10429779) | |
| 328-573, gnl|Mm7|chr9 (21077759-21077976) | |
| 666-828, gnl|bosTau2|chr20 (11981059-11981221) | |
| 666-828, gnl|canFam2|chr2 (48724253-48724444) | |
| 666-828, gnl|danRer3|chr8 (27843269-27843448) | |
| 666-828, gnl|dasNov1|scaffold_6672 (19970-19782) | |
| 666-828, gnl|echTel1|scaffold_58615 (2032-1842) | |
| 666-828, gnl|fr1|chrUn (284321017-284320832) | |
| 666-828, gnl|galGal2|chrZ (1697459-1697645) | |
| 666-828, gnl|hg17|chr5 (58321327-58321517) | |
| 666-828, gnl|Hg17|chr5 (58321512-58321347) | |
| 666-828, gnl|loxAfr1|scaffold_134 (286815-287004) | |
| 666-828, gnl|mm7|chr13 (107087632-107087442) | |
| 666-828, gnl|Mm7|chr13 (107087445-107087610) | |
| 666-828, gnl|monDom2|scaffold_27 (22467465-22467659) | |
| 666-828, gnl|oryCun1|scaffold_201045 (83948-83757) | |
| 666-828, gnl|panTro1|chr4 (57835528-57835338) | |
| 666-828, gnl|rheMac2|chr6 (56661066-56661259) | |
| 666-828, gnl|rn3|chr2 (41230151-41229961) | |
| 666-828, gnl|tetNig1|chr12 (8268538-8268717) | |
| 666-828, gnl|xenTro1|scaffold_364 (540578-540767) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-118, gnl|bosTau2|chr7 (10830480-10830584) | |
| 13-118, gnl|Hg17|chr19 (10420751-10420855) | |
| 13-118, gnl|Mm7|chr9 (21069073-21069177) | |
| 136-251, gnl|bosTau2|chr20 (11937444-11937559) | |
| 136-251, gnl|canFam2|chr2 (48760365-48760652) | |
| 136-251, gnl|danRer3|chr8 (27857911-27858173) | |
| 136-251, gnl|dasNov1|scaffold_5822 (70254-69966) | |
| 136-251, gnl|echTel1|scaffold_296966 (12932-13225) | |
| 136-251, gnl|fr1|chrUn (273260257-273259981) | |
| 136-251, gnl|hg17|chr5 (58370413-58370701) | |
| 136-251, gnl|Hg17|chr5 (58370558-58370443) | |
| 136-251, gnl|loxAfr1|scaffold_16517 (28511-28798) | |
| 136-251, gnl|mm7|chr13 (107053522-107053228) | |
| 136-251, gnl|Mm7|chr13 (107053369-107053484) | |
| 136-251, gnl|monDom2|scaffold_27 (22519953-22520274) | |
| 136-251, gnl|oryCun1|scaffold_201045 (45298-45019) | |
| 136-251, gnl|panTro1|chr4 (57785248-57784960) | |
| 136-251, gnl|rheMac2|chr6 (56703908-56704196) | |
| 136-251, gnl|rn3|chr2 (41196003-41195709) | |
| 136-251, gnl|tetNig1|chr12 (8273461-8273726) | |
| 136-251, gnl|xenTro1|scaffold_364 (573002-573299) | |
| 328-573, gnl|bosTau2|chr7 (10836979-10837222) | |
| 328-573, gnl|Hg17|chr19 (10429536-10429779) | |
| 328-573, gnl|Mm7|chr9 (21077759-21077976) | |
| 666-828, gnl|bosTau2|chr20 (11981059-11981221) | |
| 666-828, gnl|canFam2|chr2 (48724253-48724444) | |
| 666-828, gnl|danRer3|chr8 (27843269-27843448) | |
| 666-828, gnl|dasNov1|scaffold_6672 (19970-19782) | |
| 666-828, gnl|echTel1|scaffold_58615 (2032-1842) | |
| 666-828, gnl|fr1|chrUn (284321017-284320832) | |
| 666-828, gnl|galGal2|chrZ (1697459-1697645) | |
| 666-828, gnl|hg17|chr5 (58321327-58321517) | |
| 666-828, gnl|Hg17|chr5 (58321512-58321347) | |
| 666-828, gnl|loxAfr1|scaffold_134 (286815-287004) | |
| 666-828, gnl|mm7|chr13 (107087632-107087442) | |
| 666-828, gnl|Mm7|chr13 (107087445-107087610) | |
| 666-828, gnl|monDom2|scaffold_27 (22467465-22467659) | |
| 666-828, gnl|oryCun1|scaffold_201045 (83948-83757) | |
| 666-828, gnl|panTro1|chr4 (57835528-57835338) | |
| 666-828, gnl|rheMac2|chr6 (56661066-56661259) | |
| 666-828, gnl|rn3|chr2 (41230151-41229961) | |
| 666-828, gnl|tetNig1|chr12 (8268538-8268717) | |
| 666-828, gnl|xenTro1|scaffold_364 (540578-540767) |