Ss1.1-Mixn-0026c18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGCACCCCTTCATTGTCGAGCTGGCCTATGCCTTCCAGACTGGTGGCAAACTCTACC TCATCCTCGAGTGCCTTAGTGGCGGCGAGCTCTTCACGCGGCTGGAGCGAGAGGGCATCT TCCTGGAAGACACGGCCTGCTTCTACCTGTCAGAGATCACGCTGGCCCAGGGGACGCCGC CGACGTGCAGAAACATCCCTTCTTCCGGCACATTAATTGGGAGGACCTCCTGGCCCGCCG CGTGGACCCCCCTTTCCGGCCCTGCCTGCAGTCGGAGGAGGACGTGAGCCAGTTTGACAC CCACTTCACGAGGCAGACGCCGGTGGACAGTCCAGATGACACGGCCCTCAGTGAGAGTGC CAACCAGGCCTTCCTGGGTTTCACGTACGTGGCGCCCTCCGTCCTGGACAGCATCAAGGA GGGCTTCTCCTTCCAGCCCAAGCTGCGCTCTCCCCGGCGCCTCAACAGCAGCCCCCGGAC CCCCGTCAGGTGCCTGAAGTTCTCGCCCTTCGAGGGATTCCGGCCCAGCCCCGGCCCGCC AGATCCCATGGAGCCCCCTCTGCCCCAGTCTTAGCCCCCGCCGCCTCCCCCGCCGCCCTC AAGCACTGCCCCCCTCCCCATCCGACCCCCCTCAGGAACCAAGAAGTCCAAGAGGGGCCG CGGGCGCCCTGGGCGCTAGGAGGACAGGTGGGGAGGCAGGCAGCGTGGAGACCCCTCCCT CTCTGGTGGGACCCTGGGCCAGTTCCAGAGACCTGGGGCTGAGTCCAGGGTACAGGATTG CATGTGCGTGAGCGTGTGTCTCTGTTGGGGGCGGCTGTGCCCTTGAATCATGAACGCCAA GGGCCGCCGGCTGTGGCTGAGGGCATCCCCCTGGCCTCCCGCAGTTGAGCTATGCCTTGG AGAATTAAAAGTTTTGAATCGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGCACCCCTTCATTGTCGAGCTGGCCTATGCCTTCCAGACTGGTGGCAAACTCTACC TCATCCTCGAGTGCCTTAGTGGCGGCGAGCTCTTCACGCGGCTGGAGCGAGAGGGCATCT TCCTGGAAGACACGGCCTGCTTCTACCTGTCAGAGATCACGCTGGCCCAGGGGACGCCGC CGACGTGCAGAAACATCCCTTCTTCCGGCACATTAATTGGGAGGACCTCCTGGCCCGCCG CGTGGACCCCCCTTTCCGGCCCTGCCTGCAGTCGGAGGAGGACGTGAGCCAGTTTGACAC CCACTTCACGAGGCAGACGCCGGTGGACAGTCCAGATGACACGGCCCTCAGTGAGAGTGC CAACCAGGCCTTCCTGGGTTTCACGTACGTGGCGCCCTCCGTCCTGGACAGCATCAAGGA GGGCTTCTCCTTCCAGCCCAAGCTGCGCTCTCCCCGGCGCCTCAACAGCAGCCCCCGGAC CCCCGTCAGGTGCCTGAAGTTCTCGCCCTTCGAGGGATTCCGGCCCAGCCCCGGCCCGCC AGATCCCATGGAGCCCCCTCTGCCCCAGTCTTAGCCCCCGCCGCCTCCCCCGCCGCCCTC AAGCACTGCCCCCCTCCCCATCCGACCCCCCTCAGGAACCAAGAAGTCCAAGAGGGGCCG CGGGCGCCCTGGGCGCTAGGAGGACAGGTGGGGAGGCAGGCAGCGTGGAGACCCCTCCCT CTCTGGTGGGACCCTGGGCCAGTTCCAGAGACCTGGGGCTGAGTCCAGGGTACAGGATTG CATGTGCGTGAGCGTGTGTCTCTGTTGGGGGCGGCTGTGCCCTTGAATCATGAACGCCAA GGGCCGCCGGCTGTGGCTGAGGGCATCCCCCTGGCCTCCCGCAGTTGAGCTATGCCTTGG AGAATTAAAAGTTTTGAATCGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 481-704, - strand, RNAz p=0.999609 | |
| 483-704, - strand, RNAz p=0.84799 | |
| 729-845, + strand, RNAz p=0.73282 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 481-704, - strand, RNAz p=0.999609 | |
| 483-704, - strand, RNAz p=0.84799 | |
| 729-845, + strand, RNAz p=0.73282 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003952, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 268-377, gnl|bosTau2|chr19 (5134974-5135083) | |
| 268-377, gnl|canFam2|chr9 (37742297-37742428) | |
| 268-377, gnl|canFam2|chr9 (37742430-37742305) | |
| 268-377, gnl|danRer3|chr10 (27089103-27089233) | |
| 268-377, gnl|danRer3|chr15 (11202199-11202333) | |
| 268-377, gnl|dasNov1|scaffold_9478 (22700-22567) | |
| 268-377, gnl|dasNov1|scaffold_9478 (22565-22690) | |
| 268-377, gnl|echTel1|scaffold_202386 (906-1039) | |
| 268-377, gnl|echTel1|scaffold_202386 (1045-916) | |
| 268-377, gnl|fr1|chrUn (152682939-152682816) | |
| 268-377, gnl|fr1|chrUn (152682804-152682934) | |
| 268-377, gnl|galGal2|chr19 (6958743-6958868) | |
| 268-377, gnl|galGal2|chr19 (6958870-6958745) | |
| 268-377, gnl|hg17|chr17 (20575088-20575222) | |
| 268-377, gnl|Hg17|chr17 (55372978-55373087) | |
| 268-377, gnl|hg17|chr17_random (591825-591950) | |
| 268-377, gnl|loxAfr1|scaffold_47293 (20770-20903) | |
| 268-377, gnl|loxAfr1|scaffold_47293 (20909-20780) | |
| 268-377, gnl|mm7|chr11 (86576825-86576694) | |
| 268-377, gnl|mm7|chr11 (86576692-86576817) | |
| 268-377, gnl|Mm7|chr11 (86576807-86576698) | |
| 268-377, gnl|monDom2|scaffold_56 (2647429-2647302) | |
| 268-377, gnl|monDom2|scaffold_56 (2647300-2647423) | |
| 268-377, gnl|panTro1|chr19 (47475348-47475223) | |
| 268-377, gnl|panTro1|chrUn_random (19605212-19605078) | |
| 268-377, gnl|rheMac2|chr16 (44187918-44188052) | |
| 268-377, gnl|rheMac2|chr16 (44188054-44187929) | |
| 268-377, gnl|rn3|chr10 (76676474-76676343) | |
| 268-377, gnl|rn3|chr10 (76676341-76676466) | |
| 268-377, gnl|tetNig1|chrUn_random (11107895-11108008) | |
| 268-377, gnl|tetNig1|chrUn_random (11108008-11107895) | |
| 268-377, gnl|xenTro1|scaffold_38 (2990047-2989913) | |
| 268-377, gnl|xenTro1|scaffold_38 (2989911-2990044) | |
| 481-704, gnl|bosTau2|chr29 (39735483-39735260) | |
| 481-704, gnl|canFam2|chr18 (53060928-53060628) | |
| 481-704, gnl|dasNov1|scaffold_51219 (6119-5803) | |
| 481-704, gnl|echTel1|scaffold_170311 (1318-1044) | |
| 481-704, gnl|hg17|chr11 (66958918-66959233) | |
| 481-704, gnl|Hg17|chr11 (66959027-66959275) | |
| 481-704, gnl|mm7|chr19 (4052121-4051805) | |
| 481-704, gnl|Mm7|chr19 (4052014-4051792) | |
| 481-704, gnl|monDom2|scaffold_107 (1638647-1638381) | |
| 481-704, gnl|rheMac2|chr14 (7023444-7023120) | |
| 481-704, gnl|rn3|chr1 (206894947-206894630) | |
| 729-924, gnl|bosTau2|chr29 (39735258-39735056) | |
| 729-924, gnl|Hg17|chr11 (66959277-66959449) | |
| 729-924, gnl|Mm7|chr19 (4051786-4051600) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 268-377, gnl|bosTau2|chr19 (5134974-5135083) | |
| 268-377, gnl|canFam2|chr9 (37742297-37742428) | |
| 268-377, gnl|canFam2|chr9 (37742430-37742305) | |
| 268-377, gnl|danRer3|chr10 (27089103-27089233) | |
| 268-377, gnl|danRer3|chr15 (11202199-11202333) | |
| 268-377, gnl|dasNov1|scaffold_9478 (22700-22567) | |
| 268-377, gnl|dasNov1|scaffold_9478 (22565-22690) | |
| 268-377, gnl|echTel1|scaffold_202386 (906-1039) | |
| 268-377, gnl|echTel1|scaffold_202386 (1045-916) | |
| 268-377, gnl|fr1|chrUn (152682939-152682816) | |
| 268-377, gnl|fr1|chrUn (152682804-152682934) | |
| 268-377, gnl|galGal2|chr19 (6958743-6958868) | |
| 268-377, gnl|galGal2|chr19 (6958870-6958745) | |
| 268-377, gnl|hg17|chr17 (20575088-20575222) | |
| 268-377, gnl|Hg17|chr17 (55372978-55373087) | |
| 268-377, gnl|hg17|chr17_random (591825-591950) | |
| 268-377, gnl|loxAfr1|scaffold_47293 (20770-20903) | |
| 268-377, gnl|loxAfr1|scaffold_47293 (20909-20780) | |
| 268-377, gnl|mm7|chr11 (86576825-86576694) | |
| 268-377, gnl|mm7|chr11 (86576692-86576817) | |
| 268-377, gnl|Mm7|chr11 (86576807-86576698) | |
| 268-377, gnl|monDom2|scaffold_56 (2647429-2647302) | |
| 268-377, gnl|monDom2|scaffold_56 (2647300-2647423) | |
| 268-377, gnl|panTro1|chr19 (47475348-47475223) | |
| 268-377, gnl|panTro1|chrUn_random (19605212-19605078) | |
| 268-377, gnl|rheMac2|chr16 (44187918-44188052) | |
| 268-377, gnl|rheMac2|chr16 (44188054-44187929) | |
| 268-377, gnl|rn3|chr10 (76676474-76676343) | |
| 268-377, gnl|rn3|chr10 (76676341-76676466) | |
| 268-377, gnl|tetNig1|chrUn_random (11107895-11108008) | |
| 268-377, gnl|tetNig1|chrUn_random (11108008-11107895) | |
| 268-377, gnl|xenTro1|scaffold_38 (2990047-2989913) | |
| 268-377, gnl|xenTro1|scaffold_38 (2989911-2990044) | |
| 481-704, gnl|bosTau2|chr29 (39735483-39735260) | |
| 481-704, gnl|canFam2|chr18 (53060928-53060628) | |
| 481-704, gnl|dasNov1|scaffold_51219 (6119-5803) | |
| 481-704, gnl|echTel1|scaffold_170311 (1318-1044) | |
| 481-704, gnl|hg17|chr11 (66958918-66959233) | |
| 481-704, gnl|Hg17|chr11 (66959027-66959275) | |
| 481-704, gnl|mm7|chr19 (4052121-4051805) | |
| 481-704, gnl|Mm7|chr19 (4052014-4051792) | |
| 481-704, gnl|monDom2|scaffold_107 (1638647-1638381) | |
| 481-704, gnl|rheMac2|chr14 (7023444-7023120) | |
| 481-704, gnl|rn3|chr1 (206894947-206894630) | |
| 729-924, gnl|bosTau2|chr29 (39735258-39735056) | |
| 729-924, gnl|Hg17|chr11 (66959277-66959449) | |
| 729-924, gnl|Mm7|chr19 (4051786-4051600) |