Ss1.1-Mixn-0027a10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCTCGTGGCTTAGGGAGTAGCGTCTGGCTTCAGGGAGCAGAGGAGGAGGAGCGGTGG TTGGCTGCTACCGTGAGACAGCGTGGGCGAACATCTGAATGTGCCCTTTGGTGATGGGAT TGAAGCTGCCGCAGGCGAGCAAGATAACGTGGGTCTTGGTGGTCTCGGTCATTGCGAGTA GGTCCCTCGCGCTGTCCAGGGGTCGCCTCTCTTTTTGTGTCTCGATATGTTTGATTGAAT GACTTAGCTCCAGGTCTGAGGAGTAGTACTGAAGAGAACATGGGTCAGCTTCATACACAT TGTGTCCTTGAGTACTTAATTGCCACACCCTTCATACTGGATCCTAATCAATTCTTTATT CTCTGGCATCTCTGCCAAAAGGTGCATTCCTCCAAGACAGGGACCATGTCTCCTCCATGG TGGTATGTGTAGTAACCTGGACAGTGACCCCACCCCCCCGCCGAGCGAGGAGGAGCCGGA GGAGAGGAAGATGGCGGCGGCCGCCAGCACCCGCGGTGCCGCGGGGCCGCTCCGAGGAGC CTGAGAGACCCACAGAGGCTTCGCGGGAAGACGCGGGCGGCGGAGGATGAGCCTGCAGAG CGCGCAGTATCTCCGGCAGGCAGAAGTACTGAAGGCTGACATGACAGATTCTAAGCTGGG TCCAGCTGAGGTCTGGACATCCAGGCAGGCTCTGCAGGACCTGTACCAGAAAATGCTAGT TACTGATTTGGAATACGCTTTAGACAAGAAAGTAGAACAGGATCTCTGGAATCATGCCTT TAAGAATCAGATCACAACACTACAAGGCCAGGCAAAGAATCGAGCAAACCCGAATCGGAG TGAAGTTCAGGCAAACCTTTCTCTGTTCCTAGAGGCAGCTAGTGGCTTCTATACTCAGTT ATTACAAGAACTGTGTACAGTGTTTAATGTAGATTTACCATGCCGTGTAAAGTCTTCCCA ATTGGGAATTATCAGCAATAAACAGACGCATACCAGCGCCATAGTGAAGCCACAGTCCAG CTCCTGTTCCTATATCTGCCAGCACTGCCTCGTCCACCTTGGAGACATTGCTCGATACAG AAACCAGACCAGCCAGGCAGAGTCCTACTATAGGCATGCAGCTCAGCTTGTCCCTTCGAA TGGTCAGCCTTACAATCAGTTGGCTATCTTAGCTTCTTCCAAAGGAGACCATCTGACCAC AATTTTCTACTACTGCAGAAGCATTGCTGTGAAGTTCCCTTTCCCAGCTGCCTCTACTAA TCTACAAAAAGCACTTTCTAAAGCACTGGAAAGCCGGGATGAGGTGAAGACCAAGTGGGG TGTTTCTGACTTCATCAAGGCCTTTATAAAATTTCACGGTCATGTGTACCTGAGTAAGAG CTTGGAAAAGTTGAGCCCTCTTCGAGAGAAATTGGAAGAACAATTTAAGAGGCTGCTGTT CCAAAAAGCTTTCAACTCTCAGCAGTTAGTTCACGTCACTGTCATTAACCTGTTTCAACT TCATCACCTTCGTGACTTTAGCAATGAAACAGAACAGCATAGTTATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCTCGTGGCTTAGGGAGTAGCGTCTGGCTTCAGGGAGCAGAGGAGGAGGAGCGGTGG TTGGCTGCTACCGTGAGACAGCGTGGGCGAACATCTGAATGTGCCCTTTGGTGATGGGAT TGAAGCTGCCGCAGGCGAGCAAGATAACGTGGGTCTTGGTGGTCTCGGTCATTGCGAGTA GGTCCCTCGCGCTGTCCAGGGGTCGCCTCTCTTTTTGTGTCTCGATATGTTTGATTGAAT GACTTAGCTCCAGGTCTGAGGAGTAGTACTGAAGAGAACATGGGTCAGCTTCATACACAT TGTGTCCTTGAGTACTTAATTGCCACACCCTTCATACTGGATCCTAATCAATTCTTTATT CTCTGGCATCTCTGCCAAAAGGTGCATTCCTCCAAGACAGGGACCATGTCTCCTCCATGG TGGTATGTGTAGTAACCTGGACAGTGACCCCACCCCCCCGCCGAGCGAGGAGGAGCCGGA GGAGAGGAAGATGGCGGCGGCCGCCAGCACCCGCGGTGCCGCGGGGCCGCTCCGAGGAGC CTGAGAGACCCACAGAGGCTTCGCGGGAAGACGCGGGCGGCGGAGGATGAGCCTGCAGAG CGCGCAGTATCTCCGGCAGGCAGAAGTACTGAAGGCTGACATGACAGATTCTAAGCTGGG TCCAGCTGAGGTCTGGACATCCAGGCAGGCTCTGCAGGACCTGTACCAGAAAATGCTAGT TACTGATTTGGAATACGCTTTAGACAAGAAAGTAGAACAGGATCTCTGGAATCATGCCTT TAAGAATCAGATCACAACACTACAAGGCCAGGCAAAGAATCGAGCAAACCCGAATCGGAG TGAAGTTCAGGCAAACCTTTCTCTGTTCCTAGAGGCAGCTAGTGGCTTCTATACTCAGTT ATTACAAGAACTGTGTACAGTGTTTAATGTAGATTTACCATGCCGTGTAAAGTCTTCCCA ATTGGGAATTATCAGCAATAAACAGACGCATACCAGCGCCATAGTGAAGCCACAGTCCAG CTCCTGTTCCTATATCTGCCAGCACTGCCTCGTCCACCTTGGAGACATTGCTCGATACAG AAACCAGACCAGCCAGGCAGAGTCCTACTATAGGCATGCAGCTCAGCTTGTCCCTTCGAA TGGTCAGCCTTACAATCAGTTGGCTATCTTAGCTTCTTCCAAAGGAGACCATCTGACCAC AATTTTCTACTACTGCAGAAGCATTGCTGTGAAGTTCCCTTTCCCAGCTGCCTCTACTAA TCTACAAAAAGCACTTTCTAAAGCACTGGAAAGCCGGGATGAGGTGAAGACCAAGTGGGG TGTTTCTGACTTCATCAAGGCCTTTATAAAATTTCACGGTCATGTGTACCTGAGTAAGAG CTTGGAAAAGTTGAGCCCTCTTCGAGAGAAATTGGAAGAACAATTTAAGAGGCTGCTGTT CCAAAAAGCTTTCAACTCTCAGCAGTTAGTTCACGTCACTGTCATTAACCTGTTTCAACT TCATCACCTTCGTGACTTTAGCAATGAAACAGAACAGCATAGTTATAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 953-1293, - strand, RNAz p=0.970298 | |
| 1142-1288, - strand, RNAz p=0.935191 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 953-1293, - strand, RNAz p=0.970298 | |
| 1142-1288, - strand, RNAz p=0.935191 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 88-233, gnl|bosTau2|chr16 (45487450-45487302) | |
| 88-233, gnl|Hg17|chr1 (180118975-180119123) | |
| 88-233, gnl|Mm7|chr1 (152916263-152916117) | |
| 645-765, gnl|bosTau2|chr16 (46249340-46249460) | |
| 645-765, gnl|Hg17|chr1 (180216663-180216783) | |
| 645-765, gnl|Mm7|chr1 (152829442-152829322) | |
| 895-1070, gnl|bosTau2|chr16 (46260937-46261112) | |
| 895-1070, gnl|Hg17|chr1 (180227384-180227559) | |
| 895-1070, gnl|Mm7|chr1 (152822926-152822751) | |
| 1142-1293, gnl|bosTau2|chr16 (46263181-46263332) | |
| 1142-1293, gnl|canFam2|chr7 (19848003-19848178) | |
| 1142-1293, gnl|danRer3|chr2 (28913520-28913696) | |
| 1142-1293, gnl|dasNov1|scaffold_505 (185211-185031) | |
| 1142-1293, gnl|echTel1|scaffold_312347 (36045-35870) | |
| 1142-1293, gnl|fr1|chrUn (307403339-307403515) | |
| 1142-1293, gnl|galGal2|chr8 (7589105-7589295) | |
| 1142-1293, gnl|hg17|chr1 (180229673-180229862) | |
| 1142-1293, gnl|Hg17|chr1 (180229683-180229834) | |
| 1142-1293, gnl|loxAfr1|scaffold_14266 (24828-25003) | |
| 1142-1293, gnl|mm7|chr1 (152820585-152820410) | |
| 1142-1293, gnl|Mm7|chr1 (152820573-152820422) | |
| 1142-1293, gnl|monDom2|scaffold_16 (37492978-37493157) | |
| 1142-1293, gnl|oryCun1|scaffold_183328 (22409-22233) | |
| 1142-1293, gnl|panTro1|chr1_random (35542522-35542713) | |
| 1142-1293, gnl|rheMac2|chr1 (187127433-187127253) | |
| 1142-1293, gnl|rn3|chr13 (67872310-67872135) | |
| 1142-1293, gnl|tetNig1|chr15_random (42879-42704) | |
| 1142-1293, gnl|xenTro1|scaffold_126 (644642-644808) | |
| 1424-1548, gnl|bosTau2|chr16 (46268224-46268349) | |
| 1424-1548, gnl|canFam2|chr7 (19853840-19854014) | |
| 1424-1548, gnl|danRer3|chr2 (28914009-28914183) | |
| 1424-1548, gnl|dasNov1|scaffold_505 (181589-181413) | |
| 1424-1548, gnl|echTel1|scaffold_312347 (29677-29503) | |
| 1424-1548, gnl|galGal2|chr8 (7591774-7591948) | |
| 1424-1548, gnl|hg17|chr1 (180233950-180234124) | |
| 1424-1548, gnl|Hg17|chr1 (180233949-180234074) | |
| 1424-1548, gnl|loxAfr1|scaffold_14266 (29758-29932) | |
| 1424-1548, gnl|mm7|chr1 (152817689-152817515) | |
| 1424-1548, gnl|Mm7|chr1 (152817688-152817563) | |
| 1424-1548, gnl|monDom2|scaffold_16 (37496271-37496444) | |
| 1424-1548, gnl|oryCun1|scaffold_183328 (18206-18032) | |
| 1424-1548, gnl|panTro1|chr1_random (35546835-35547009) | |
| 1424-1548, gnl|rheMac2|chr1 (187123195-187123021) | |
| 1424-1548, gnl|rn3|chr13 (67869010-67868836) | |
| 1424-1548, gnl|tetNig1|chr15_random (42440-42238) | |
| 1424-1548, gnl|xenTro1|scaffold_126 (646586-646760) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-233, gnl|bosTau2|chr16 (45487450-45487302) | |
| 88-233, gnl|Hg17|chr1 (180118975-180119123) | |
| 88-233, gnl|Mm7|chr1 (152916263-152916117) | |
| 645-765, gnl|bosTau2|chr16 (46249340-46249460) | |
| 645-765, gnl|Hg17|chr1 (180216663-180216783) | |
| 645-765, gnl|Mm7|chr1 (152829442-152829322) | |
| 895-1070, gnl|bosTau2|chr16 (46260937-46261112) | |
| 895-1070, gnl|Hg17|chr1 (180227384-180227559) | |
| 895-1070, gnl|Mm7|chr1 (152822926-152822751) | |
| 1142-1293, gnl|bosTau2|chr16 (46263181-46263332) | |
| 1142-1293, gnl|canFam2|chr7 (19848003-19848178) | |
| 1142-1293, gnl|danRer3|chr2 (28913520-28913696) | |
| 1142-1293, gnl|dasNov1|scaffold_505 (185211-185031) | |
| 1142-1293, gnl|echTel1|scaffold_312347 (36045-35870) | |
| 1142-1293, gnl|fr1|chrUn (307403339-307403515) | |
| 1142-1293, gnl|galGal2|chr8 (7589105-7589295) | |
| 1142-1293, gnl|hg17|chr1 (180229673-180229862) | |
| 1142-1293, gnl|Hg17|chr1 (180229683-180229834) | |
| 1142-1293, gnl|loxAfr1|scaffold_14266 (24828-25003) | |
| 1142-1293, gnl|mm7|chr1 (152820585-152820410) | |
| 1142-1293, gnl|Mm7|chr1 (152820573-152820422) | |
| 1142-1293, gnl|monDom2|scaffold_16 (37492978-37493157) | |
| 1142-1293, gnl|oryCun1|scaffold_183328 (22409-22233) | |
| 1142-1293, gnl|panTro1|chr1_random (35542522-35542713) | |
| 1142-1293, gnl|rheMac2|chr1 (187127433-187127253) | |
| 1142-1293, gnl|rn3|chr13 (67872310-67872135) | |
| 1142-1293, gnl|tetNig1|chr15_random (42879-42704) | |
| 1142-1293, gnl|xenTro1|scaffold_126 (644642-644808) | |
| 1424-1548, gnl|bosTau2|chr16 (46268224-46268349) | |
| 1424-1548, gnl|canFam2|chr7 (19853840-19854014) | |
| 1424-1548, gnl|danRer3|chr2 (28914009-28914183) | |
| 1424-1548, gnl|dasNov1|scaffold_505 (181589-181413) | |
| 1424-1548, gnl|echTel1|scaffold_312347 (29677-29503) | |
| 1424-1548, gnl|galGal2|chr8 (7591774-7591948) | |
| 1424-1548, gnl|hg17|chr1 (180233950-180234124) | |
| 1424-1548, gnl|Hg17|chr1 (180233949-180234074) | |
| 1424-1548, gnl|loxAfr1|scaffold_14266 (29758-29932) | |
| 1424-1548, gnl|mm7|chr1 (152817689-152817515) | |
| 1424-1548, gnl|Mm7|chr1 (152817688-152817563) | |
| 1424-1548, gnl|monDom2|scaffold_16 (37496271-37496444) | |
| 1424-1548, gnl|oryCun1|scaffold_183328 (18206-18032) | |
| 1424-1548, gnl|panTro1|chr1_random (35546835-35547009) | |
| 1424-1548, gnl|rheMac2|chr1 (187123195-187123021) | |
| 1424-1548, gnl|rn3|chr13 (67869010-67868836) | |
| 1424-1548, gnl|tetNig1|chr15_random (42440-42238) | |
| 1424-1548, gnl|xenTro1|scaffold_126 (646586-646760) |