Non-Coding RNA Search

Ss1.1-Mixn-0027m09.5

Sequence:


               
               AGCCTAGTCAAG------------TTCCAGATGTGGTCCGCGAGGCGAGTGCTGCGCAGG
CCACTCTGAGCCTGGTGCTGCCCCAGCTGCGCTACCTGCACATCTTCCTGGAGCAGCTTC
GCGGGCACTTCGAGGGGCAGAGCGCCGGGGAGGTGGGCGCGGCTGTGCGGCTGGCTGAGG
GCCTGGCCCTGCAGCTCGCCACAGACCTCCAGCTCACCGAGCTCTTCCACCGCGAGGAGC
TGGTGCTGGCCACGCTCCTGGACCCCCGCTTCAAGGGGAGGATTGAGGCCATCCTGCCCG
CGGGGGCTGACATTGACCACTGGAAGCAGGTTCTCGTGTGCAAGGTCAAGGAGATCATGG
TGTCCGAGGACGCCACGCCGCCCTCCCCTTCCCTGCAGGGCCCCAGGGCTGGGCGCGCGG
GCGCCACCTTGAGTGGCAGAAGGAGCAGGAGCCCTGGGACTGGCGGCAAGGGCCAGGAGG
AGCCGGTGCGGAGGAGCAGTCCCTCTGGGTCCTTGCTGCTGGCCCAGAGGGAGAGGAGCT
TGCTGGAGCAGCTGGAGAGTGCCGGGCTGCTGGCCTCTGAGAGCAGTGGTGCCTCCCTGT
CCACAGAGAACCACCTGGCCAGCATCATCGTTAAGAAGTACCTGCGTGAGAACGAGACGG
TGGGCGCCCAGGAGGACCCCCTGGCTTACTGGGCAAAGAGGCGGGCAGTCTGGCCAGCCC
TGGCGAGACTGGCCACCATCTATCTGTCCTGCCCCGCCACGGGCGCCTTCTCTGCTAGCG
TCTTTGCCTCCCTGGACAGCCCCGCCATCGTGGAGCACGGCGCCTCGCTCCCAGTGGAGA
CGGTCGAGCACCTTCTCTTCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTAGTCAAG------------TTCCAGATGTGGTCCGCGAGGCGAGTGCTGCGCAGG
CCACTCTGAGCCTGGTGCTGCCCCAGCTGCGCTACCTGCACATCTTCCTGGAGCAGCTTC
GCGGGCACTTCGAGGGGCAGAGCGCCGGGGAGGTGGGCGCGGCTGTGCGGCTGGCTGAGG
GCCTGGCCCTGCAGCTCGCCACAGACCTCCAGCTCACCGAGCTCTTCCACCGCGAGGAGC
TGGTGCTGGCCACGCTCCTGGACCCCCGCTTCAAGGGGAGGATTGAGGCCATCCTGCCCG
CGGGGGCTGACATTGACCACTGGAAGCAGGTTCTCGTGTGCAAGGTCAAGGAGATCATGG
TGTCCGAGGACGCCACGCCGCCCTCCCCTTCCCTGCAGGGCCCCAGGGCTGGGCGCGCGG
GCGCCACCTTGAGTGGCAGAAGGAGCAGGAGCCCTGGGACTGGCGGCAAGGGCCAGGAGG
AGCCGGTGCGGAGGAGCAGTCCCTCTGGGTCCTTGCTGCTGGCCCAGAGGGAGAGGAGCT
TGCTGGAGCAGCTGGAGAGTGCCGGGCTGCTGGCCTCTGAGAGCAGTGGTGCCTCCCTGT
CCACAGAGAACCACCTGGCCAGCATCATCGTTAAGAAGTACCTGCGTGAGAACGAGACGG
TGGGCGCCCAGGAGGACCCCCTGGCTTACTGGGCAAAGAGGCGGGCAGTCTGGCCAGCCC
TGGCGAGACTGGCCACCATCTATCTGTCCTGCCCCGCCACGGGCGCCTTCTCTGCTAGCG
TCTTTGCCTCCCTGGACAGCCCCGCCATCGTGGAGCACGGCGCCTCGCTCCCAGTGGAGA
CGGTCGAGCACCTTCTCTTCTTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CG029_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CG029_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               466-579, - strand, RNAz p=0.944066
               

               
               660-809, - strand, RNAz p=0.977018

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               466-579, - strand, RNAz p=0.944066
               

               
               660-809, - strand, RNAz p=0.977018

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               30-852, gnl|bosTau2|chr4 (65027136-65027960)
               

               
               30-852, gnl|Hg17|chr7 (149465154-149465941)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-852, gnl|bosTau2|chr4 (65027136-65027960)
               

               
               30-852, gnl|Hg17|chr7 (149465154-149465941)

	466-579, - strand, RNAz p=0.944066
	660-809, - strand, RNAz p=0.977018

	30-852, gnl\|bosTau2\|chr4 (65027136-65027960)
	30-852, gnl\|Hg17\|chr7 (149465154-149465941)