Non-Coding RNA Search

Ss1.1-Mixn-0027n19.5

Sequence:


               
               CGGGCGCGACCATCCGCGCTGCGGCGGCGGCGACTGAGCGCTGCCTCAGTCTGCAGCGGG
CAGCGGAAGAGTCGCGTCGCTCCTCAGAGCGCAGCTGGGCTCCTGGGCCCCGCGCGGTCC
GCCCCCGCGGCTCCTGACCAGACTGCTCCTAGGACCCCCTGCCCCGCGCCGCAGCCATGA
ACTACCTGCGGCGCCGCCTGTCGGACAGCAACTTCATGGCCAATCTGCCAAATGGGTACA
TGACAGACCTGCAGCGCCCGCAGCCGCCCCCGCCGCCGCCTGCTGCCCCCAGCCCCGGAG
CCACGCCCGGTCCTGGGACCGCCACTGCCGAGAGGGCCTCCTCATCCGCCCCCGTAGCCT
CTCCGGCTGCCCCTAGCCCTGGGTCCTCGGGGGGCGGTGGCTTCTTCTCCTCGCTGTCCA
ATGCGGTCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCGCGACCATCCGCGCTGCGGCGGCGGCGACTGAGCGCTGCCTCAGTCTGCAGCGGG
CAGCGGAAGAGTCGCGTCGCTCCTCAGAGCGCAGCTGGGCTCCTGGGCCCCGCGCGGTCC
GCCCCCGCGGCTCCTGACCAGACTGCTCCTAGGACCCCCTGCCCCGCGCCGCAGCCATGA
ACTACCTGCGGCGCCGCCTGTCGGACAGCAACTTCATGGCCAATCTGCCAAATGGGTACA
TGACAGACCTGCAGCGCCCGCAGCCGCCCCCGCCGCCGCCTGCTGCCCCCAGCCCCGGAG
CCACGCCCGGTCCTGGGACCGCCACTGCCGAGAGGGCCTCCTCATCCGCCCCCGTAGCCT
CTCCGGCTGCCCCTAGCCCTGGGTCCTCGGGGGGCGGTGGCTTCTTCTCCTCGCTGTCCA
ATGCGGTCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6LDK2_9MURI

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6LDK2_9MURI

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               118-237, - strand, RNAz p=0.583304
               

               
               314-432, - strand, RNAz p=0.863105

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, - strand, RNAz p=0.583304
               

               
               314-432, - strand, RNAz p=0.863105

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-432, gnl|bosTau2|chrX (25634143-25633709)
               

               
               1-432, gnl|canFam2|chrX (41188275-41188545)
               

               
               1-432, gnl|danRer3|chr8 (24083864-24083645)
               

               
               1-432, gnl|fr1|chrUn (48436989-48436764)
               

               
               1-432, gnl|hg17|chrX (47235122-47235392)
               

               
               1-432, gnl|Hg17|chrX (47235557-47235126)
               

               
               1-432, gnl|loxAfr1|scaffold_125144 (4596-4874)
               

               
               1-432, gnl|mm7|chrX (19353680-19353950)
               

               
               1-432, gnl|Mm7|chrX (19354115-19353684)
               

               
               1-432, gnl|monDom2|scaffold_134 (584057-583739)
               

               
               1-432, gnl|oryCun1|scaffold_176501 (44834-45053)
               

               
               1-432, gnl|rheMac2|chrX (45444193-45444463)
               

               
               1-432, gnl|rn3|chrX (12585276-12585546)
               

               
               1-432, gnl|tetNig1|chr9 (7033442-7033700)
               

               
               1-432, gnl|xenTro1|scaffold_332 (796384-796150)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chrX (25634143-25633709)
               

               
               1-432, gnl|canFam2|chrX (41188275-41188545)
               

               
               1-432, gnl|danRer3|chr8 (24083864-24083645)
               

               
               1-432, gnl|fr1|chrUn (48436989-48436764)
               

               
               1-432, gnl|hg17|chrX (47235122-47235392)
               

               
               1-432, gnl|Hg17|chrX (47235557-47235126)
               

               
               1-432, gnl|loxAfr1|scaffold_125144 (4596-4874)
               

               
               1-432, gnl|mm7|chrX (19353680-19353950)
               

               
               1-432, gnl|Mm7|chrX (19354115-19353684)
               

               
               1-432, gnl|monDom2|scaffold_134 (584057-583739)
               

               
               1-432, gnl|oryCun1|scaffold_176501 (44834-45053)
               

               
               1-432, gnl|rheMac2|chrX (45444193-45444463)
               

               
               1-432, gnl|rn3|chrX (12585276-12585546)
               

               
               1-432, gnl|tetNig1|chr9 (7033442-7033700)
               

               
               1-432, gnl|xenTro1|scaffold_332 (796384-796150)

	118-237, - strand, RNAz p=0.583304
	314-432, - strand, RNAz p=0.863105

	1-432, gnl\|bosTau2\|chrX (25634143-25633709)
	1-432, gnl\|canFam2\|chrX (41188275-41188545)
	1-432, gnl\|danRer3\|chr8 (24083864-24083645)
	1-432, gnl\|fr1\|chrUn (48436989-48436764)
	1-432, gnl\|hg17\|chrX (47235122-47235392)
	1-432, gnl\|Hg17\|chrX (47235557-47235126)
	1-432, gnl\|loxAfr1\|scaffold_125144 (4596-4874)
	1-432, gnl\|mm7\|chrX (19353680-19353950)
	1-432, gnl\|Mm7\|chrX (19354115-19353684)
	1-432, gnl\|monDom2\|scaffold_134 (584057-583739)
	1-432, gnl\|oryCun1\|scaffold_176501 (44834-45053)
	1-432, gnl\|rheMac2\|chrX (45444193-45444463)
	1-432, gnl\|rn3\|chrX (12585276-12585546)
	1-432, gnl\|tetNig1\|chr9 (7033442-7033700)
	1-432, gnl\|xenTro1\|scaffold_332 (796384-796150)