Non-Coding RNA Search

Ss1.1-Mixn-0028b10.5

Sequence:


               
               TCTACTTCTTCTTCAACGCACTCCTGCTGTTGCTCACCCTCATGAACCCAGATGGCAGGG
TCTTTTGGCCTTGTGGGCTGGGCAAAGAGCTATGGCGGGCAAGGAAGGCGGGACGGGGCG
CTGCGCGGGGGCATGGGGTTCCCAGGTTAACCGGGCCGGTTCTGGCTCTCAGGAAGCCGC
TGAAGAACGGCCTGGTCAAGGACAAGCGCTTCTGAACCCCTCGACCCGGCCCCGCCGCCC
AGGACCCAGCCATACCCAACCACGCCCCCGGGGACCAGCCATGCTGTTTCCCCAGTTGCC
CCCGGACCCTGGCCCTATCAAGCTCCGCCTCCTGTCCCCTCTCCCCCGCCCTGGCCACTC
CCCGGACCCCTGCCCCGTACCCTCGAGACCTCGCCCCCTGGATTAGTCCCAATTCGGCTT
CAGAATCGCGGCCACGCCCCCCGGGGCCCAGACCCTGCCCAGCCCCGCGTCTCTCCTGCG
ACCCCTTCCCCGCCCCCAGACCGCAGGTCCGGGAGCCCAGCAGCTCCTGAACACTCGCCG
GACCGCCGCCTGCAAAGAAGATGCCCTCGCCTTGCCGCCGAGCCCTTCTGCTCCTACTGG
CCCTGCTGCTGCCCTCGCCATCCCTGGCCCGCGCCCCTGCTGCCCCGGGCCCTGCCGCCT
CCCTGCTGCGGGCTCTCGGGTTGTCCGACGCACCCCGGGACGCCCCCACGTCCCGGCCCG
TACCCCCGGTCATGTGGCGCTTATTCCGCCGCCGGGACCACCAGGAAGCCAGGGCGGGCT
CAAGGAGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTACTTCTTCTTCAACGCACTCCTGCTGTTGCTCACCCTCATGAACCCAGATGGCAGGG
TCTTTTGGCCTTGTGGGCTGGGCAAAGAGCTATGGCGGGCAAGGAAGGCGGGACGGGGCG
CTGCGCGGGGGCATGGGGTTCCCAGGTTAACCGGGCCGGTTCTGGCTCTCAGGAAGCCGC
TGAAGAACGGCCTGGTCAAGGACAAGCGCTTCTGAACCCCTCGACCCGGCCCCGCCGCCC
AGGACCCAGCCATACCCAACCACGCCCCCGGGGACCAGCCATGCTGTTTCCCCAGTTGCC
CCCGGACCCTGGCCCTATCAAGCTCCGCCTCCTGTCCCCTCTCCCCCGCCCTGGCCACTC
CCCGGACCCCTGCCCCGTACCCTCGAGACCTCGCCCCCTGGATTAGTCCCAATTCGGCTT
CAGAATCGCGGCCACGCCCCCCGGGGCCCAGACCCTGCCCAGCCCCGCGTCTCTCCTGCG
ACCCCTTCCCCGCCCCCAGACCGCAGGTCCGGGAGCCCAGCAGCTCCTGAACACTCGCCG
GACCGCCGCCTGCAAAGAAGATGCCCTCGCCTTGCCGCCGAGCCCTTCTGCTCCTACTGG
CCCTGCTGCTGCCCTCGCCATCCCTGGCCCGCGCCCCTGCTGCCCCGGGCCCTGCCGCCT
CCCTGCTGCGGGCTCTCGGGTTGTCCGACGCACCCCGGGACGCCCCCACGTCCCGGCCCG
TACCCCCGGTCATGTGGCGCTTATTCCGCCGCCGGGACCACCAGGAAGCCAGGGCGGGCT
CAAGGAGGACAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               343-439, - strand, RNAz p=0.595427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-439, - strand, RNAz p=0.595427

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-789, gnl|bosTau2|chr7 (2317392-2316663)
               

               
               77-789, gnl|Hg17|chr19 (18842521-18841876)
               

               
               77-789, gnl|Mm7|chr8 (68784662-68785409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-789, gnl|bosTau2|chr7 (2317392-2316663)
               

               
               77-789, gnl|Hg17|chr19 (18842521-18841876)
               

               
               77-789, gnl|Mm7|chr8 (68784662-68785409)

	77-789, gnl\|bosTau2\|chr7 (2317392-2316663)
	77-789, gnl\|Hg17\|chr19 (18842521-18841876)
	77-789, gnl\|Mm7\|chr8 (68784662-68785409)