Non-Coding RNA Search

Ss1.1-Mixn-0028d21.5

Sequence:


               
               GGCGGCAGGATGTGGTCAACTGGCCGTCGTATGACAACGTTGTCCAGCGGCTCATCGAGC
AGATCCACCCTTCGAAGGATGACAGTCAACATTCCAACGCCTCCCAGTCCCTGTGCGACA
TCATCCGCCTGAGCCGTGAGCAGGTGATCCAAGTGCAGGACAGCCCAGAGCCCGACCAGC
TGTTGGCCACCCTGGAGAAGCAGGAGACGATTGAGCAGCTCTTGAGCAACATGTTGGAGG
GGGAGCAGAACCCATCTGTCATTGTGAGCGGGATCCAGGTGCTGCTGACGCTGCTGGAGC
CCAGGAGGCCCAGGTCCGAGTCTGTGAGTGTGAATAACTTCCTGAGCAGTGTCGACGGGC
AGCTGGAGCTCCTAGCCCAGGCAACACTGGACAGCGCCGTGTGCAGCGTGGGCGCCCTGC
ACGCCCTGCGTCCCCGGCTCAGCCACTTCCACCAGCTCCTGCTTGAGCCGCCCGAGCTGG
AGCCGTTGCGCACGACATGGGGCAGCCTGGCCCCGCCACTGGGCAACACTCGGCTGCATG
TGGTCAAGCTGCTGGCCAGTGCCCTGAGCGCCAATGATGCAGCCCTGACCCAGGAGCTCC
TGGCGCTGGACGTGCCCAACACCATGCTGGACCTCTTCTTCCACTATGTGTTCAACAACT
TTTTGCACACCCAAGTGGAGGTATGTGTGAGCACGATGCTGAGCTCCGGGCCGCCTGCCG
ACAGCAGCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCAGGATGTGGTCAACTGGCCGTCGTATGACAACGTTGTCCAGCGGCTCATCGAGC
AGATCCACCCTTCGAAGGATGACAGTCAACATTCCAACGCCTCCCAGTCCCTGTGCGACA
TCATCCGCCTGAGCCGTGAGCAGGTGATCCAAGTGCAGGACAGCCCAGAGCCCGACCAGC
TGTTGGCCACCCTGGAGAAGCAGGAGACGATTGAGCAGCTCTTGAGCAACATGTTGGAGG
GGGAGCAGAACCCATCTGTCATTGTGAGCGGGATCCAGGTGCTGCTGACGCTGCTGGAGC
CCAGGAGGCCCAGGTCCGAGTCTGTGAGTGTGAATAACTTCCTGAGCAGTGTCGACGGGC
AGCTGGAGCTCCTAGCCCAGGCAACACTGGACAGCGCCGTGTGCAGCGTGGGCGCCCTGC
ACGCCCTGCGTCCCCGGCTCAGCCACTTCCACCAGCTCCTGCTTGAGCCGCCCGAGCTGG
AGCCGTTGCGCACGACATGGGGCAGCCTGGCCCCGCCACTGGGCAACACTCGGCTGCATG
TGGTCAAGCTGCTGGCCAGTGCCCTGAGCGCCAATGATGCAGCCCTGACCCAGGAGCTCC
TGGCGCTGGACGTGCCCAACACCATGCTGGACCTCTTCTTCCACTATGTGTTCAACAACT
TTTTGCACACCCAAGTGGAGGTATGTGTGAGCACGATGCTGAGCTCCGGGCCGCCTGCCG
ACAGCAGCTCCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               512-630, - strand, RNAz p=0.511777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               512-630, - strand, RNAz p=0.511777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               475-630, gnl|bosTau2|chr18 (52970539-52970694)
               

               
               475-630, gnl|Hg17|chr19 (60444573-60444418)
               

               
               475-630, gnl|Mm7|chr7 (4214782-4214627)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               475-630, gnl|bosTau2|chr18 (52970539-52970694)
               

               
               475-630, gnl|Hg17|chr19 (60444573-60444418)
               

               
               475-630, gnl|Mm7|chr7 (4214782-4214627)

	475-630, gnl\|bosTau2\|chr18 (52970539-52970694)
	475-630, gnl\|Hg17\|chr19 (60444573-60444418)
	475-630, gnl\|Mm7\|chr7 (4214782-4214627)