Non-Coding RNA Search

Ss1.1-Mixn-0028k18.5

Sequence:


               
               GGGAGAGCCGGGTGCTGAGAGCCGAGACCCTGCCTCTTCTTTTCCTTTCCCCTGACCCAC
CTCGCCTCTGTCCTCCCTCCCTTTTTGGTTCCCGGAGCCGGAAGGAGCCGAAGCGCCCAC
GGAAAAAGCCGAAGGTGTCTGCTGTGAGTCCTTCCCCAGGCGGTGGCGGAAGGAGCCGAA
GTTCTCCGAAAGGGGGAGGAGGTTGCTCTTGGAATCTCCGGAAAGAGCCGAAGTTTGGAA
ACGGGTTTAATCTCTGGTTGGGCCCGAGGGGGAGCGCCAGAGACCTTCGGAAAGTGCCGA
AATCCGGGACGGTTAGGATTGTCGGAAGTGGCCGATTGCTTGGACAGGGCCGTTGGGAAA
GAGAGGGTAGAATCCGTGGAAGCAGCCAAAGACGGACGGTTTGAGTTCTTGGAAGAAGCT
GAATTCTAAGTGGGGAGTCTGGGTGCTAGGAATGCGAGGACCTACGGAAACATCCGAACG
TTGAAGAGCTACTATCCGAAAAGTTACGAAAACCTGAGAAGCCTGCGAAACCCTCGCTTC
GGGTGTTTTCGGAAGCAGCCGAAGTCGCCTCTCCCTTCGCTCCTCCACGGTCCGGAAATA
GCCGACGCGTTTCGGAGCCAGGCCCTGGGGGGAGGTGCGCCTCGTGGGCGGGCCGGCGGG
GAGAGGGGCGGAGCCGGGGCGGGGCTGGGCGGGCGGCAGGGGCTTGATTAGGTAGGAGGC
GGTGGAACGCCGGCGGCGGCCGGAAGTAGCCGAAGCAAGCGGCGGAAGTAGCCGAAGCGG
CCGGATCGGGCGCGAGAGCTACACAGGCGAGAGCTACACAGGGCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGCCGGGTGCTGAGAGCCGAGACCCTGCCTCTTCTTTTCCTTTCCCCTGACCCAC
CTCGCCTCTGTCCTCCCTCCCTTTTTGGTTCCCGGAGCCGGAAGGAGCCGAAGCGCCCAC
GGAAAAAGCCGAAGGTGTCTGCTGTGAGTCCTTCCCCAGGCGGTGGCGGAAGGAGCCGAA
GTTCTCCGAAAGGGGGAGGAGGTTGCTCTTGGAATCTCCGGAAAGAGCCGAAGTTTGGAA
ACGGGTTTAATCTCTGGTTGGGCCCGAGGGGGAGCGCCAGAGACCTTCGGAAAGTGCCGA
AATCCGGGACGGTTAGGATTGTCGGAAGTGGCCGATTGCTTGGACAGGGCCGTTGGGAAA
GAGAGGGTAGAATCCGTGGAAGCAGCCAAAGACGGACGGTTTGAGTTCTTGGAAGAAGCT
GAATTCTAAGTGGGGAGTCTGGGTGCTAGGAATGCGAGGACCTACGGAAACATCCGAACG
TTGAAGAGCTACTATCCGAAAAGTTACGAAAACCTGAGAAGCCTGCGAAACCCTCGCTTC
GGGTGTTTTCGGAAGCAGCCGAAGTCGCCTCTCCCTTCGCTCCTCCACGGTCCGGAAATA
GCCGACGCGTTTCGGAGCCAGGCCCTGGGGGGAGGTGCGCCTCGTGGGCGGGCCGGCGGG
GAGAGGGGCGGAGCCGGGGCGGGGCTGGGCGGGCGGCAGGGGCTTGATTAGGTAGGAGGC
GGTGGAACGCCGGCGGCGGCCGGAAGTAGCCGAAGCAAGCGGCGGAAGTAGCCGAAGCGG
CCGGATCGGGCGCGAGAGCTACACAGGCGAGAGCTACACAGGGCCCTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               693-811, - strand, RNAz p=0.526431
               

               
               708-827, - strand, RNAz p=0.77936

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               693-811, - strand, RNAz p=0.526431
               

               
               708-827, - strand, RNAz p=0.77936

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               537-828, gnl|bosTau2|chr18 (52529074-52529365)
               

               
               537-828, gnl|canFam2|chr1 (105167675-105167468)
               

               
               537-828, gnl|dasNov1|scaffold_148062 (2648-2435)
               

               
               537-828, gnl|echTel1|scaffold_294460 (40100-40291)
               

               
               537-828, gnl|hg17|chr19 (60857979-60858195)
               

               
               537-828, gnl|Hg17|chr19 (60857978-60858267)
               

               
               537-828, gnl|mm7|chr7 (4639085-4639278)
               

               
               537-828, gnl|Mm7|chr7 (4639083-4639345)
               

               
               537-828, gnl|monDom2|scaffold_352 (57542-57387)
               

               
               537-828, gnl|panTro1|chr20 (58300652-58300864)
               

               
               537-828, gnl|rheMac2|chr19 (61684319-61684534)
               

               
               537-828, gnl|rn3|chr1 (67595409-67595217)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               537-828, gnl|bosTau2|chr18 (52529074-52529365)
               

               
               537-828, gnl|canFam2|chr1 (105167675-105167468)
               

               
               537-828, gnl|dasNov1|scaffold_148062 (2648-2435)
               

               
               537-828, gnl|echTel1|scaffold_294460 (40100-40291)
               

               
               537-828, gnl|hg17|chr19 (60857979-60858195)
               

               
               537-828, gnl|Hg17|chr19 (60857978-60858267)
               

               
               537-828, gnl|mm7|chr7 (4639085-4639278)
               

               
               537-828, gnl|Mm7|chr7 (4639083-4639345)
               

               
               537-828, gnl|monDom2|scaffold_352 (57542-57387)
               

               
               537-828, gnl|panTro1|chr20 (58300652-58300864)
               

               
               537-828, gnl|rheMac2|chr19 (61684319-61684534)
               

               
               537-828, gnl|rn3|chr1 (67595409-67595217)

	693-811, - strand, RNAz p=0.526431
	708-827, - strand, RNAz p=0.77936

	537-828, gnl\|bosTau2\|chr18 (52529074-52529365)
	537-828, gnl\|canFam2\|chr1 (105167675-105167468)
	537-828, gnl\|dasNov1\|scaffold_148062 (2648-2435)
	537-828, gnl\|echTel1\|scaffold_294460 (40100-40291)
	537-828, gnl\|hg17\|chr19 (60857979-60858195)
	537-828, gnl\|Hg17\|chr19 (60857978-60858267)
	537-828, gnl\|mm7\|chr7 (4639085-4639278)
	537-828, gnl\|Mm7\|chr7 (4639083-4639345)
	537-828, gnl\|monDom2\|scaffold_352 (57542-57387)
	537-828, gnl\|panTro1\|chr20 (58300652-58300864)
	537-828, gnl\|rheMac2\|chr19 (61684319-61684534)
	537-828, gnl\|rn3\|chr1 (67595409-67595217)