Non-Coding RNA Search

Ss1.1-Mixn-0028n20.5

Sequence:


               
               GGTGCGGGCTGCAGCCTGGGGGACCAGGGCACTCCAGGGATCCAGGCGTCCGGGGACCCA
GGTGTTTACCTAATCCAGGGTGGACGGCGGCGTGGCCCCAGGCCCGGCACCCCCTGCCCG
CCCTCTCGCCTTCACAGGCGGAGCGACCATGGCCACGATGGTGCTTCCTCGGGAGGAGAA
GCTGAGCCAGGATGAGATCGTGCTGGGCACCAAGGCCGTCATCCAAGGGCTAGAGACCCT
GCGCGGGGAGCATCGCGCCCTTCTCGCGCCCCTGGTCGCTCATGAAGCTGGTGAGGCAGA
GCCTGGCTCACAGGAGCGCTGTGTCCTCCTTCGCCGCTCCCTGGAGGCCATCGAGCTGGG
GCTGGGGGAGGCCCAGGTAATCTTGGCGCTGTCGAGCCACCTGGGGGCTGTAGAGTCAGA
GAAGCAGAAGCTACGGGCTCAGGTGCGGCGCCTGGTGCAAGAGAACCAGTGGCTGCGAGA
GGAGCTGGCAGGGACGCAGCAGAAGCTGCAGCGCAGCGAGCAGGCTGTGGCCCAGCTCGA
GGAGGAGAAGCAGCACTTGTTGTTCATGAGCCAGATCCGCAAGTTGGATGAGGATACCTC
CCCCAACGAGGAGAAGGGGGACATCCCCAAAGACTCTCTGGACGACCTGTTCCCCAACGA
AGAGGAGCAGAACCCAGCCCCCAGCCCTGGAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCGGGCTGCAGCCTGGGGGACCAGGGCACTCCAGGGATCCAGGCGTCCGGGGACCCA
GGTGTTTACCTAATCCAGGGTGGACGGCGGCGTGGCCCCAGGCCCGGCACCCCCTGCCCG
CCCTCTCGCCTTCACAGGCGGAGCGACCATGGCCACGATGGTGCTTCCTCGGGAGGAGAA
GCTGAGCCAGGATGAGATCGTGCTGGGCACCAAGGCCGTCATCCAAGGGCTAGAGACCCT
GCGCGGGGAGCATCGCGCCCTTCTCGCGCCCCTGGTCGCTCATGAAGCTGGTGAGGCAGA
GCCTGGCTCACAGGAGCGCTGTGTCCTCCTTCGCCGCTCCCTGGAGGCCATCGAGCTGGG
GCTGGGGGAGGCCCAGGTAATCTTGGCGCTGTCGAGCCACCTGGGGGCTGTAGAGTCAGA
GAAGCAGAAGCTACGGGCTCAGGTGCGGCGCCTGGTGCAAGAGAACCAGTGGCTGCGAGA
GGAGCTGGCAGGGACGCAGCAGAAGCTGCAGCGCAGCGAGCAGGCTGTGGCCCAGCTCGA
GGAGGAGAAGCAGCACTTGTTGTTCATGAGCCAGATCCGCAAGTTGGATGAGGATACCTC
CCCCAACGAGGAGAAGGGGGACATCCCCAAAGACTCTCTGGACGACCTGTTCCCCAACGA
AGAGGAGCAGAACCCAGCCCCCAGCCCTGGAGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61554445|gb|AAX46558.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61554445|gb|AAX46558.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               453-584, - strand, RNAz p=0.982768

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-584, - strand, RNAz p=0.982768

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               370-603, gnl|bosTau2|chr21 (48091698-48091931)
               

               
               370-603, gnl|Hg17|chr14 (103193629-103193862)
               

               
               370-603, gnl|Mm7|chr12 (109298942-109299175)
               


               
               374-584, gnl|bosTau2|chr18 (38521062-38520852)
               

               
               374-584, gnl|Hg17|chr19 (50541639-50541849)
               

               
               374-584, gnl|Mm7|chr7 (17080569-17080359)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-603, gnl|bosTau2|chr21 (48091698-48091931)
               

               
               370-603, gnl|Hg17|chr14 (103193629-103193862)
               

               
               370-603, gnl|Mm7|chr12 (109298942-109299175)
               


               
               374-584, gnl|bosTau2|chr18 (38521062-38520852)
               

               
               374-584, gnl|Hg17|chr19 (50541639-50541849)
               

               
               374-584, gnl|Mm7|chr7 (17080569-17080359)

	370-603, gnl\|bosTau2\|chr21 (48091698-48091931)
	370-603, gnl\|Hg17\|chr14 (103193629-103193862)
	370-603, gnl\|Mm7\|chr12 (109298942-109299175)

	374-584, gnl\|bosTau2\|chr18 (38521062-38520852)
	374-584, gnl\|Hg17\|chr19 (50541639-50541849)
	374-584, gnl\|Mm7\|chr7 (17080569-17080359)