Non-Coding RNA Search

Ss1.1-Mixn-0029e17.5

Sequence:


               
               GCATACCAGCAGGGCCTCTGCGGACTGGGGAGCTCCTTATGTTTCCAAAGGGATGGGAGG
CTCCCAGCTTCTGTCTTTCCTCCCCCGAACCCCCCCTCCCCCAAGTTTCACATTTCTCGG
AATTTGCAGGGCGCAGTGGGGGCTCCAGGGGTCCTCAGAGCCCGGGCACCTGCGGGCTGG
TTCAAGCAGGCACAGTTGGAGATGGGGGGCGGGGAGGGGAAGGTTGTAGGGATGTAGGGG
CACCCCAAGGGGCCGAAGGCGGCTAGGGCGGTCTTCTCGCAACCACCCCCGCCGCTGCTC
CTCCGGGCAGGAGGCCCCCGCCCGCGCTCCCGGTCCTGCAGGCCCCGCCGGGCGTTCACA
CGGAGCTCCTGCGCTTCATGAGGCCGCGGAAGGTGGACAGGCTGTGCAGGCCCGTGGACA
CGGAGCTGATGGCGGAGCGCTGCGCCCCGCTGCACAGGCAGCGGTGCGAGGGCGTGTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATACCAGCAGGGCCTCTGCGGACTGGGGAGCTCCTTATGTTTCCAAAGGGATGGGAGG
CTCCCAGCTTCTGTCTTTCCTCCCCCGAACCCCCCCTCCCCCAAGTTTCACATTTCTCGG
AATTTGCAGGGCGCAGTGGGGGCTCCAGGGGTCCTCAGAGCCCGGGCACCTGCGGGCTGG
TTCAAGCAGGCACAGTTGGAGATGGGGGGCGGGGAGGGGAAGGTTGTAGGGATGTAGGGG
CACCCCAAGGGGCCGAAGGCGGCTAGGGCGGTCTTCTCGCAACCACCCCCGCCGCTGCTC
CTCCGGGCAGGAGGCCCCCGCCCGCGCTCCCGGTCCTGCAGGCCCCGCCGGGCGTTCACA
CGGAGCTCCTGCGCTTCATGAGGCCGCGGAAGGTGGACAGGCTGTGCAGGCCCGTGGACA
CGGAGCTGATGGCGGAGCGCTGCGCCCCGCTGCACAGGCAGCGGTGCGAGGGCGTGTCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-305, + strand, RNAz p=0.956695

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-305, + strand, RNAz p=0.956695

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-396, gnl|bosTau2|chr11 (55164268-55163889)
               

               
               3-396, gnl|Hg17|chr2 (26863414-26863091)
               

               
               3-396, gnl|Mm7|chr5 (29655685-29655358)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-396, gnl|bosTau2|chr11 (55164268-55163889)
               

               
               3-396, gnl|Hg17|chr2 (26863414-26863091)
               

               
               3-396, gnl|Mm7|chr5 (29655685-29655358)

	3-396, gnl\|bosTau2\|chr11 (55164268-55163889)
	3-396, gnl\|Hg17\|chr2 (26863414-26863091)
	3-396, gnl\|Mm7\|chr5 (29655685-29655358)