Ss1.1-Mixn-0030e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCTCAGGCCCTGATAAGAAGAAAAAAGCATACAAGTCAAAGGCTATTACTCCTAAGCG ACTTCTCACATCTATAACCACAAAAAGCACCCTTCCTTCTTCAGTTATGGCCAGTCTTAA TGCTGTGCGTACCAGCAACTTTGCCCTTGTTGGATCTTACACACTGTCATTATCCTCAGT AGGAAACACTAAATTTGCTCTGGACAAGGTACCCTTTCTATCTCCTTTGGAAGGTCATAT ATATTTAAAAATAAAGTGTCAAGTGAATTCAAGTGTTGAAGAAAGAGGTTTTCTAACCAT ATTTGAAGATGTTAGTGGTTTTGGTGCCTGGCATCGGAGGTGGTGTGTTCTTTCTGGAAA CTGTATCTCTTATTGGACTTACCCAGATGATGAGAAACGGAAGAATCCCATAGGAAGACT AAATTTGGCCAATTGTACCAGTCGTCAAATAGAACCAGCCAACAGAGAATTTTGTGCAAG ACGCAACACTTTTGAACTCATTACTGTCCGACCACAAAGAGAAGATGACCGAGAGACTCT GGTCAGCCAATGCAGGGACACACTGTGTGTCACCAAGAACTGGCTCTCTGCAGATACCAA GGAGGAGCGGGATCTCTGGATGCAAAAACTCAATCAAGTTCTTGTTGATATTCGCCTCTG GCAACCTGATGCTTGCTATAAACCTATTGGAAAGCCTTAAACTATGGGACATTTCCATGT TATATAGAGGTTTTCTGACCTATGTCATAAATGTATCTTAAGAGCATCAGATTTGCTGAT TGCATTTTATGCTTTAAGTATGAAAGGGTATGTGCCAATATTCATTCACTACATATTATA CAGTATTTATATCTTTTGTATGTAAAACATCACCTGATTTCTCTTGTTATTCATAAATGA CTGGAAGAAAAATTTATTATAGTTGATTTTGCTAAATTTAAAAAGTTTCATTTACCCTAT AATCTAATTACTNCATTATTCATGGGTAAAATTTTCTTAGAGTAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCTCAGGCCCTGATAAGAAGAAAAAAGCATACAAGTCAAAGGCTATTACTCCTAAGCG ACTTCTCACATCTATAACCACAAAAAGCACCCTTCCTTCTTCAGTTATGGCCAGTCTTAA TGCTGTGCGTACCAGCAACTTTGCCCTTGTTGGATCTTACACACTGTCATTATCCTCAGT AGGAAACACTAAATTTGCTCTGGACAAGGTACCCTTTCTATCTCCTTTGGAAGGTCATAT ATATTTAAAAATAAAGTGTCAAGTGAATTCAAGTGTTGAAGAAAGAGGTTTTCTAACCAT ATTTGAAGATGTTAGTGGTTTTGGTGCCTGGCATCGGAGGTGGTGTGTTCTTTCTGGAAA CTGTATCTCTTATTGGACTTACCCAGATGATGAGAAACGGAAGAATCCCATAGGAAGACT AAATTTGGCCAATTGTACCAGTCGTCAAATAGAACCAGCCAACAGAGAATTTTGTGCAAG ACGCAACACTTTTGAACTCATTACTGTCCGACCACAAAGAGAAGATGACCGAGAGACTCT GGTCAGCCAATGCAGGGACACACTGTGTGTCACCAAGAACTGGCTCTCTGCAGATACCAA GGAGGAGCGGGATCTCTGGATGCAAAAACTCAATCAAGTTCTTGTTGATATTCGCCTCTG GCAACCTGATGCTTGCTATAAACCTATTGGAAAGCCTTAAACTATGGGACATTTCCATGT TATATAGAGGTTTTCTGACCTATGTCATAAATGTATCTTAAGAGCATCAGATTTGCTGAT TGCATTTTATGCTTTAAGTATGAAAGGGTATGTGCCAATATTCATTCACTACATATTATA CAGTATTTATATCTTTTGTATGTAAAACATCACCTGATTTCTCTTGTTATTCATAAATGA CTGGAAGAAAAATTTATTATAGTTGATTTTGCTAAATTTAAAAAGTTTCATTTACCCTAT AATCTAATTACTNCATTATTCATGGGTAAAATTTTCTTAGAGTAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 656-771, + strand, RNAz p=0.989608 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 656-771, + strand, RNAz p=0.989608 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_018685, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 111-211, gnl|bosTau2|chr4 (29084615-29084715) | |
| 111-211, gnl|canFam2|chr14 (50801995-50802127) | |
| 111-211, gnl|danRer3|chr19 (68118404-68118271) | |
| 111-211, gnl|echTel1|scaffold_320273 (5929-6061) | |
| 111-211, gnl|galGal2|chr2 (45832656-45832520) | |
| 111-211, gnl|hg17|chr7 (36239763-36239895) | |
| 111-211, gnl|Hg17|chr7 (36239782-36239880) | |
| 111-211, gnl|loxAfr1|scaffold_6362 (41265-41133) | |
| 111-211, gnl|mm7|chr9 (22229849-22229717) | |
| 111-211, gnl|Mm7|chr9 (22229827-22229730) | |
| 111-211, gnl|panTro1|chr6 (37406471-37406605) | |
| 111-211, gnl|rheMac2|chr3 (89802497-89802365) | |
| 111-211, gnl|rn3|chr8 (21671394-21671262) | |
| 111-211, gnl|tetNig1|chrUn_random (10399878-10399759) | |
| 111-211, gnl|xenTro1|scaffold_219 (883164-883282) | |
| 289-403, gnl|bosTau2|chr4 (29097225-29097339) | |
| 289-403, gnl|canFam2|chr14 (50812528-50812632) | |
| 289-403, gnl|danRer3|chr19 (68117546-68117466) | |
| 289-403, gnl|dasNov1|scaffold_36944 (450-555) | |
| 289-403, gnl|echTel1|scaffold_220964 (7087-7192) | |
| 289-403, gnl|fr1|chrUn (39798612-39798512) | |
| 289-403, gnl|hg17|chr7 (36256572-36256678) | |
| 289-403, gnl|Hg17|chr7 (36256597-36256711) | |
| 289-403, gnl|loxAfr1|scaffold_47420 (4732-4836) | |
| 289-403, gnl|mm7|chr9 (22216884-22216780) | |
| 289-403, gnl|Mm7|chr9 (22216857-22216745) | |
| 289-403, gnl|monDom2|scaffold_215 (645400-645486) | |
| 289-403, gnl|oryCun1|scaffold_205681 (155284-155390) | |
| 289-403, gnl|panTro1|chr6 (37423039-37423145) | |
| 289-403, gnl|rheMac2|chr3 (89785881-89785775) | |
| 289-403, gnl|rn3|chr8 (21646213-21646118) | |
| 289-403, gnl|tetNig1|chrUn_random (10399475-10399399) | |
| 289-403, gnl|xenTro1|scaffold_219 (884603-884684) | |
| 577-1006, gnl|bosTau2|chr4 (29104795-29105235) | |
| 577-1006, gnl|Hg17|chr7 (36265326-36265750) | |
| 577-1006, gnl|Mm7|chr9 (22211986-22211545) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-211, gnl|bosTau2|chr4 (29084615-29084715) | |
| 111-211, gnl|canFam2|chr14 (50801995-50802127) | |
| 111-211, gnl|danRer3|chr19 (68118404-68118271) | |
| 111-211, gnl|echTel1|scaffold_320273 (5929-6061) | |
| 111-211, gnl|galGal2|chr2 (45832656-45832520) | |
| 111-211, gnl|hg17|chr7 (36239763-36239895) | |
| 111-211, gnl|Hg17|chr7 (36239782-36239880) | |
| 111-211, gnl|loxAfr1|scaffold_6362 (41265-41133) | |
| 111-211, gnl|mm7|chr9 (22229849-22229717) | |
| 111-211, gnl|Mm7|chr9 (22229827-22229730) | |
| 111-211, gnl|panTro1|chr6 (37406471-37406605) | |
| 111-211, gnl|rheMac2|chr3 (89802497-89802365) | |
| 111-211, gnl|rn3|chr8 (21671394-21671262) | |
| 111-211, gnl|tetNig1|chrUn_random (10399878-10399759) | |
| 111-211, gnl|xenTro1|scaffold_219 (883164-883282) | |
| 289-403, gnl|bosTau2|chr4 (29097225-29097339) | |
| 289-403, gnl|canFam2|chr14 (50812528-50812632) | |
| 289-403, gnl|danRer3|chr19 (68117546-68117466) | |
| 289-403, gnl|dasNov1|scaffold_36944 (450-555) | |
| 289-403, gnl|echTel1|scaffold_220964 (7087-7192) | |
| 289-403, gnl|fr1|chrUn (39798612-39798512) | |
| 289-403, gnl|hg17|chr7 (36256572-36256678) | |
| 289-403, gnl|Hg17|chr7 (36256597-36256711) | |
| 289-403, gnl|loxAfr1|scaffold_47420 (4732-4836) | |
| 289-403, gnl|mm7|chr9 (22216884-22216780) | |
| 289-403, gnl|Mm7|chr9 (22216857-22216745) | |
| 289-403, gnl|monDom2|scaffold_215 (645400-645486) | |
| 289-403, gnl|oryCun1|scaffold_205681 (155284-155390) | |
| 289-403, gnl|panTro1|chr6 (37423039-37423145) | |
| 289-403, gnl|rheMac2|chr3 (89785881-89785775) | |
| 289-403, gnl|rn3|chr8 (21646213-21646118) | |
| 289-403, gnl|tetNig1|chrUn_random (10399475-10399399) | |
| 289-403, gnl|xenTro1|scaffold_219 (884603-884684) | |
| 577-1006, gnl|bosTau2|chr4 (29104795-29105235) | |
| 577-1006, gnl|Hg17|chr7 (36265326-36265750) | |
| 577-1006, gnl|Mm7|chr9 (22211986-22211545) |