Ss1.1-Mixn-0030e20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCTCGCGGTGGAGATGTACACCGAGGACTGGATCATCACCCACAGGAGGTACCAGCA CCTGAGTGCAGTGTACAGCCCCATCACTGCAGAGACACAGCGAGAGCGGCAGAAGGGCCT CACCCGGCAGGTCTTCGAGCAGGATGCTTCTGGGGATGAGAGGTCTGGCCCAGAAGACTC GGATGACCCCCGGCACTCCTCAGGCTCCCCAGATGACACCCCACGGAGCAGTGGCGCCTC TGGCATCTTTGACCTGAGGAACTTGGCGGCCGACTCCTTGCTGCCCTCACTGCTGGAGCG TGCGGCCCCAGAGGACGTGGACCGGCGCAATGAGGCTCTGCGACGGCAGCACCGGCCCCG CGCCCTGCTCACCCTCTACCCAGCACCTGATGAGGACGAGGCTGTGGAACGCTGCAGCCG CCCGGAGCCACCCCGAGAACACTTCGGACAACGGATCCTGGTCAAGTGTCTGTCGCTTAA GTTCGAGATCGAAATCGAGCCCATCTTTGGCATCTTAGCCCTGAATGATGTTCGGGAAAA AAAGAAGATCTCAGAGAACTTCTACTTCGACCTGAACTCAGAATCCATGAAGGGGCTGCT GCGGGCCCATGGCACCCACCCTGCCATTTCCACCTTGGCCCGCTCTGCCATCTTCTCTGT GACCTACCCCTCGCCCGACATCTTCCTGGTCATCAAGCTGGAGAAGGTGCTGCAGCAGGG GGACATCAGCGAGTGCTGTGAACCCTACATGGTGATGAAGGAGGCAGACACAGCCAAGAA CAAAGAGAAATTGGAGAAGCTGCGCCTGGCGGCTGAACAGTTCTGCACCCGCCTCGGCCG CTACCGCATGCCCTTCGCCTGGACAGCAGTGCACCTTGCTAACATCGTGAGCAGTGCGGG CCAATCTGACCGTGACTCGGACTCAGAGGGCGAGCGCCGACCCGCCTGGACTGACCGCCG CCGTCGGGGGCCTCAGGACCGGACAAGTAGCGGGGACGACACTTGCAGCTTCTCTGGCTT CCGCCCTGCCACCCTAACTGTCACCAATTTCTTTAAGCAGGAGGCGGAGCGGCTCAGTGA TGAAGACCTTTTCAAGTTTCTGGCTGACATGCGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCTCGCGGTGGAGATGTACACCGAGGACTGGATCATCACCCACAGGAGGTACCAGCA CCTGAGTGCAGTGTACAGCCCCATCACTGCAGAGACACAGCGAGAGCGGCAGAAGGGCCT CACCCGGCAGGTCTTCGAGCAGGATGCTTCTGGGGATGAGAGGTCTGGCCCAGAAGACTC GGATGACCCCCGGCACTCCTCAGGCTCCCCAGATGACACCCCACGGAGCAGTGGCGCCTC TGGCATCTTTGACCTGAGGAACTTGGCGGCCGACTCCTTGCTGCCCTCACTGCTGGAGCG TGCGGCCCCAGAGGACGTGGACCGGCGCAATGAGGCTCTGCGACGGCAGCACCGGCCCCG CGCCCTGCTCACCCTCTACCCAGCACCTGATGAGGACGAGGCTGTGGAACGCTGCAGCCG CCCGGAGCCACCCCGAGAACACTTCGGACAACGGATCCTGGTCAAGTGTCTGTCGCTTAA GTTCGAGATCGAAATCGAGCCCATCTTTGGCATCTTAGCCCTGAATGATGTTCGGGAAAA AAAGAAGATCTCAGAGAACTTCTACTTCGACCTGAACTCAGAATCCATGAAGGGGCTGCT GCGGGCCCATGGCACCCACCCTGCCATTTCCACCTTGGCCCGCTCTGCCATCTTCTCTGT GACCTACCCCTCGCCCGACATCTTCCTGGTCATCAAGCTGGAGAAGGTGCTGCAGCAGGG GGACATCAGCGAGTGCTGTGAACCCTACATGGTGATGAAGGAGGCAGACACAGCCAAGAA CAAAGAGAAATTGGAGAAGCTGCGCCTGGCGGCTGAACAGTTCTGCACCCGCCTCGGCCG CTACCGCATGCCCTTCGCCTGGACAGCAGTGCACCTTGCTAACATCGTGAGCAGTGCGGG CCAATCTGACCGTGACTCGGACTCAGAGGGCGAGCGCCGACCCGCCTGGACTGACCGCCG CCGTCGGGGGCCTCAGGACCGGACAAGTAGCGGGGACGACACTTGCAGCTTCTCTGGCTT CCGCCCTGCCACCCTAACTGTCACCAATTTCTTTAAGCAGGAGGCGGAGCGGCTCAGTGA TGAAGACCTTTTCAAGTTTCTGGCTGACATGCGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 181-300, - strand, RNAz p=0.56353 | |
| 181-272, - strand, RNAz p=0.598179 | |
| 546-665, - strand, RNAz p=0.786802 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 181-300, - strand, RNAz p=0.56353 | |
| 181-272, - strand, RNAz p=0.598179 | |
| 546-665, - strand, RNAz p=0.786802 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 181-395, gnl|bosTau2|chr7 (11122033-11121819) | |
| 181-395, gnl|canFam2|chr20 (53038031-53037745) | |
| 181-395, gnl|danRer3|chrNA (177471739-177471497) | |
| 181-395, gnl|echTel1|scaffold_223620 (2661-2406) | |
| 181-395, gnl|fr1|chrUn (67673423-67673675) | |
| 181-395, gnl|hg17|chr19 (11222542-11222822) | |
| 181-395, gnl|Hg17|chr19 (11222763-11222549) | |
| 181-395, gnl|loxAfr1|scaffold_105254 (705-425) | |
| 181-395, gnl|mm7|chr9 (21726608-21726880) | |
| 181-395, gnl|Mm7|chr9 (21726829-21726615) | |
| 181-395, gnl|monDom2|scaffold_106 (3220995-3221277) | |
| 181-395, gnl|panTro1|chr20 (11620361-11620641) | |
| 181-395, gnl|rheMac2|chr19 (11075604-11075884) | |
| 181-395, gnl|rn3|chr8 (20957211-20957483) | |
| 181-395, gnl|tetNig1|chr3 (11721275-11721040) | |
| 181-395, gnl|xenTro1|scaffold_468 (960890-960605) | |
| 546-697, gnl|bosTau2|chr7 (11118249-11118098) | |
| 546-697, gnl|canFam2|chr20 (53041818-53041639) | |
| 546-697, gnl|danRer3|chrNA (177480197-177480028) | |
| 546-697, gnl|dasNov1|scaffold_249514 (3532-3352) | |
| 546-697, gnl|echTel1|scaffold_75784 (387-574) | |
| 546-697, gnl|fr1|chrUn (67672430-67672610) | |
| 546-697, gnl|hg17|chr19 (11217228-11217407) | |
| 546-697, gnl|Hg17|chr19 (11217390-11217239) | |
| 546-697, gnl|loxAfr1|scaffold_105254 (4133-3954) | |
| 546-697, gnl|mm7|chr9 (21723890-21724069) | |
| 546-697, gnl|Mm7|chr9 (21724052-21723901) | |
| 546-697, gnl|monDom2|scaffold_106 (3216730-3216907) | |
| 546-697, gnl|oryCun1|scaffold_174877 (149257-149411) | |
| 546-697, gnl|panTro1|chr20 (11614226-11614405) | |
| 546-697, gnl|rheMac2|chr19 (11070830-11071009) | |
| 546-697, gnl|rn3|chr8 (20954328-20954507) | |
| 546-697, gnl|tetNig1|chr3 (11722301-11722121) | |
| 546-697, gnl|xenTro1|scaffold_468 (962835-962666) | |
| 774-932, gnl|bosTau2|chr7 (11116982-11116824) | |
| 774-932, gnl|Hg17|chr19 (11215391-11215233) | |
| 774-932, gnl|Mm7|chr9 (21722184-21722032) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-395, gnl|bosTau2|chr7 (11122033-11121819) | |
| 181-395, gnl|canFam2|chr20 (53038031-53037745) | |
| 181-395, gnl|danRer3|chrNA (177471739-177471497) | |
| 181-395, gnl|echTel1|scaffold_223620 (2661-2406) | |
| 181-395, gnl|fr1|chrUn (67673423-67673675) | |
| 181-395, gnl|hg17|chr19 (11222542-11222822) | |
| 181-395, gnl|Hg17|chr19 (11222763-11222549) | |
| 181-395, gnl|loxAfr1|scaffold_105254 (705-425) | |
| 181-395, gnl|mm7|chr9 (21726608-21726880) | |
| 181-395, gnl|Mm7|chr9 (21726829-21726615) | |
| 181-395, gnl|monDom2|scaffold_106 (3220995-3221277) | |
| 181-395, gnl|panTro1|chr20 (11620361-11620641) | |
| 181-395, gnl|rheMac2|chr19 (11075604-11075884) | |
| 181-395, gnl|rn3|chr8 (20957211-20957483) | |
| 181-395, gnl|tetNig1|chr3 (11721275-11721040) | |
| 181-395, gnl|xenTro1|scaffold_468 (960890-960605) | |
| 546-697, gnl|bosTau2|chr7 (11118249-11118098) | |
| 546-697, gnl|canFam2|chr20 (53041818-53041639) | |
| 546-697, gnl|danRer3|chrNA (177480197-177480028) | |
| 546-697, gnl|dasNov1|scaffold_249514 (3532-3352) | |
| 546-697, gnl|echTel1|scaffold_75784 (387-574) | |
| 546-697, gnl|fr1|chrUn (67672430-67672610) | |
| 546-697, gnl|hg17|chr19 (11217228-11217407) | |
| 546-697, gnl|Hg17|chr19 (11217390-11217239) | |
| 546-697, gnl|loxAfr1|scaffold_105254 (4133-3954) | |
| 546-697, gnl|mm7|chr9 (21723890-21724069) | |
| 546-697, gnl|Mm7|chr9 (21724052-21723901) | |
| 546-697, gnl|monDom2|scaffold_106 (3216730-3216907) | |
| 546-697, gnl|oryCun1|scaffold_174877 (149257-149411) | |
| 546-697, gnl|panTro1|chr20 (11614226-11614405) | |
| 546-697, gnl|rheMac2|chr19 (11070830-11071009) | |
| 546-697, gnl|rn3|chr8 (20954328-20954507) | |
| 546-697, gnl|tetNig1|chr3 (11722301-11722121) | |
| 546-697, gnl|xenTro1|scaffold_468 (962835-962666) | |
| 774-932, gnl|bosTau2|chr7 (11116982-11116824) | |
| 774-932, gnl|Hg17|chr19 (11215391-11215233) | |
| 774-932, gnl|Mm7|chr9 (21722184-21722032) |