Ss1.1-Mixn-0031a13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAGATGCAGATGAGAGCATATGAAGTGGAGAGGAGGTTGAAACTGGGCAGCCTAACC CAATTTCCCAATTTCGAAACTGCCTGCTGGTACATGGGGAAGCACCTGCTGGAGGCATTC AAAGGTTCTCACAAATCTGGGAAGCAGCTGCCCCCTCATTTAGTCCAAGGAGCTAAAATT CTCAATGGTGCTTTCCGATCATGGACGAAAAAGCAGGCTTTGGCGGAGCACGAGGACGAG CTCCCAGAGCACTTCAAACCCTCGCAGCTCATCAAAGACCTCGCCAAAGAGATCCGGCTC AGTGAGAATGCCTCCAAGGCCTCCCGACCCGAAGTGACAGCAGCAGTCTCCTCGGATGAG GTCTGTTTTGGGGACCGGGAGAAGGAGGAGCCCCCATCCCCCATTGAGGCCAGCCCTCCT CGGTCCTTCCTGGAGAAGGTGTCCAAAAAAAAGACTCCTAAAACCGTGAAGATGCCCAAG CCGTCCAAAGTTCCCTAGCCCCCGAAGCCCCCCAAGCCTCCCAAATCACTGAAGCTCAAG GACGGGGGCAAGAAGAAGGGGAAGAAGTGCCGGGGCCCGGCTTCACCCACCATCCCCAAC CTGGACCTGCTGGAGGCCCACACCAAGGAGGCACTGACCAAGATCGAGCCTCCCAAGAAA GGCAAGGCCACAAAGAATGTCCTGAGTGTGCCCAACAAGGAGGTGATCAGCACACAGAAT GACGTGGAGAGGTTGGAAATCCGAGAGCAAACCAAGAGCAAGTCAGAGGCCAAGTGGAAA TACAAGAACAGCAAACCTGATTCCCTGCTGAAGATGGAGGAAGAGCAGAAGCTGGAGAAG TCTCCTCTGGCAGGAAACAAGGACACCAAGTTCTCATTTTCCTTCTCCAACAAGAAACTC CTGGGCTCCAAGACCCTCAAGCCACAGCCAAGCCCAGGGGTGTTCGGGGCCTTGCAGAAC TTCAAGGAGGACAAGCCCCAGCCAGTCCGGGACGAGTATGAGTATGTGTCGGATGACGGG GAGCTCAAGATCGATGAGTTTCCCATCCGAAGGAAGAAGAATGCTCCGAAGAGGGACTTG TCCTTCTTACTGGACAAGAAGGAGCCGCTGCCCACACCCACTTCGAAGCCAAAGCTGGAC TCAGCGCTCTACAAGCAGAGCGACGACTCCTCTGATGAGGGCTCGCTTCACATCGACACG GATACCAAGCCCGCCCGCAACGCCAAAGTGAAGAAGGATGGTGGGGGTTCAGCTGCGGGC ATCCTGGACCTGCTGCAGGCCAGCGAGGAGGTTGGCGCACTTGAGTACAACCCCAACAGC CAGCCCCCCGCCTCCCCCAGCACACAGGAAGCCATTCAGGGAATGCTGTCCATGGCCAAC CTGCAGGCCTCCGACTCCTGCCTGCAGACTGCATGGGGCGCCGGCCAGGCCAAGGGCAGC TCGCTGGCGGCCCACGGCCCCCGAAAGAATGGGGCAGGTGGTAAGAGTGCAGGCAAGCGG CTGCTGAAGAGGACAGCCAAGAACAGCGTGGACCTGGATGATTACGAGGAGGAGCAGGAC CACCTGGATGCCTGCTTCAAGGACTCTGACTACGTTTACCCCTCCCTGGAGTCAGATGAG GACAGTCCTGTCTTTAAGTCTCGGTCCAAGAAGAGGAAAGGCTCAGACGATGCTCCTTAC AGCCCAACAGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAGATGCAGATGAGAGCATATGAAGTGGAGAGGAGGTTGAAACTGGGCAGCCTAACC CAATTTCCCAATTTCGAAACTGCCTGCTGGTACATGGGGAAGCACCTGCTGGAGGCATTC AAAGGTTCTCACAAATCTGGGAAGCAGCTGCCCCCTCATTTAGTCCAAGGAGCTAAAATT CTCAATGGTGCTTTCCGATCATGGACGAAAAAGCAGGCTTTGGCGGAGCACGAGGACGAG CTCCCAGAGCACTTCAAACCCTCGCAGCTCATCAAAGACCTCGCCAAAGAGATCCGGCTC AGTGAGAATGCCTCCAAGGCCTCCCGACCCGAAGTGACAGCAGCAGTCTCCTCGGATGAG GTCTGTTTTGGGGACCGGGAGAAGGAGGAGCCCCCATCCCCCATTGAGGCCAGCCCTCCT CGGTCCTTCCTGGAGAAGGTGTCCAAAAAAAAGACTCCTAAAACCGTGAAGATGCCCAAG CCGTCCAAAGTTCCCTAGCCCCCGAAGCCCCCCAAGCCTCCCAAATCACTGAAGCTCAAG GACGGGGGCAAGAAGAAGGGGAAGAAGTGCCGGGGCCCGGCTTCACCCACCATCCCCAAC CTGGACCTGCTGGAGGCCCACACCAAGGAGGCACTGACCAAGATCGAGCCTCCCAAGAAA GGCAAGGCCACAAAGAATGTCCTGAGTGTGCCCAACAAGGAGGTGATCAGCACACAGAAT GACGTGGAGAGGTTGGAAATCCGAGAGCAAACCAAGAGCAAGTCAGAGGCCAAGTGGAAA TACAAGAACAGCAAACCTGATTCCCTGCTGAAGATGGAGGAAGAGCAGAAGCTGGAGAAG TCTCCTCTGGCAGGAAACAAGGACACCAAGTTCTCATTTTCCTTCTCCAACAAGAAACTC CTGGGCTCCAAGACCCTCAAGCCACAGCCAAGCCCAGGGGTGTTCGGGGCCTTGCAGAAC TTCAAGGAGGACAAGCCCCAGCCAGTCCGGGACGAGTATGAGTATGTGTCGGATGACGGG GAGCTCAAGATCGATGAGTTTCCCATCCGAAGGAAGAAGAATGCTCCGAAGAGGGACTTG TCCTTCTTACTGGACAAGAAGGAGCCGCTGCCCACACCCACTTCGAAGCCAAAGCTGGAC TCAGCGCTCTACAAGCAGAGCGACGACTCCTCTGATGAGGGCTCGCTTCACATCGACACG GATACCAAGCCCGCCCGCAACGCCAAAGTGAAGAAGGATGGTGGGGGTTCAGCTGCGGGC ATCCTGGACCTGCTGCAGGCCAGCGAGGAGGTTGGCGCACTTGAGTACAACCCCAACAGC CAGCCCCCCGCCTCCCCCAGCACACAGGAAGCCATTCAGGGAATGCTGTCCATGGCCAAC CTGCAGGCCTCCGACTCCTGCCTGCAGACTGCATGGGGCGCCGGCCAGGCCAAGGGCAGC TCGCTGGCGGCCCACGGCCCCCGAAAGAATGGGGCAGGTGGTAAGAGTGCAGGCAAGCGG CTGCTGAAGAGGACAGCCAAGAACAGCGTGGACCTGGATGATTACGAGGAGGAGCAGGAC CACCTGGATGCCTGCTTCAAGGACTCTGACTACGTTTACCCCTCCCTGGAGTCAGATGAG GACAGTCCTGTCTTTAAGTCTCGGTCCAAGAAGAGGAAAGGCTCAGACGATGCTCCTTAC AGCCCAACAGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 344-1592, - strand, RNAz p=0.906321 | |
| 967-1084, + strand, RNAz p=0.987686 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 344-1592, - strand, RNAz p=0.906321 | |
| 967-1084, + strand, RNAz p=0.987686 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 16-126, gnl|bosTau2|chr8 (47600692-47600802) | |
| 16-126, gnl|canFam2|chr1 (101272705-101272855) | |
| 16-126, gnl|danRer3|chr11 (28715065-28715176) | |
| 16-126, gnl|dasNov1|scaffold_258365 (200-60) | |
| 16-126, gnl|echTel1|scaffold_268049 (5796-5661) | |
| 16-126, gnl|fr1|chrUn (269678326-269678195) | |
| 16-126, gnl|galGal2|chr12 (6377774-6377905) | |
| 16-126, gnl|hg17|chr13 (18434101-18434252) | |
| 16-126, gnl|Hg17|chr9 (93498324-93498434) | |
| 16-126, gnl|loxAfr1|scaffold_10087 (34554-34428) | |
| 16-126, gnl|mm7|chr13 (48303277-48303428) | |
| 16-126, gnl|Mm7|chr13 (48303407-48303297) | |
| 16-126, gnl|monDom2|scaffold_5 (51182444-51182595) | |
| 16-126, gnl|oryCun1|scaffold_108511 (3815-3966) | |
| 16-126, gnl|panTro1|chr14 (17334803-17334954) | |
| 16-126, gnl|rheMac2|chr15 (105420201-105420050) | |
| 16-126, gnl|rn3|chr17 (21821288-21821137) | |
| 16-126, gnl|tetNig1|chrUn_random (11979248-11979136) | |
| 16-126, gnl|xenTro1|scaffold_902 (354094-353972) | |
| 305-667, gnl|bosTau2|chr8 (47604380-47604742) | |
| 305-667, gnl|Hg17|chr9 (93502027-93502398) | |
| 305-667, gnl|Mm7|chr13 (48301125-48300763) | |
| 905-1084, gnl|bosTau2|chr8 (47608976-47609155) | |
| 905-1084, gnl|Hg17|chr9 (93507522-93507701) | |
| 905-1084, gnl|Mm7|chr13 (48297303-48297124) | |
| 1317-1630, gnl|bosTau2|chr8 (47614674-47614987) | |
| 1317-1630, gnl|canFam2|chr1 (101261996-101261702) | |
| 1317-1630, gnl|danRer3|chr11 (28694555-28694240) | |
| 1317-1630, gnl|dasNov1|scaffold_177735 (770-1107) | |
| 1317-1630, gnl|echTel1|scaffold_268263 (7426-7721) | |
| 1317-1630, gnl|fr1|chrUn (269682379-269682701) | |
| 1317-1630, gnl|galGal2|chr12 (6362134-6361834) | |
| 1317-1630, gnl|hg17|chr9 (93515411-93515712) | |
| 1317-1630, gnl|Hg17|chr9 (93515419-93515736) | |
| 1317-1630, gnl|loxAfr1|scaffold_17478 (13988-14331) | |
| 1317-1630, gnl|mm7|chr13 (48291147-48290852) | |
| 1317-1630, gnl|Mm7|chr13 (48291137-48290829) | |
| 1317-1630, gnl|monDom2|scaffold_5 (51150473-51150171) | |
| 1317-1630, gnl|oryCun1|scaffold_205985 (3861-4215) | |
| 1317-1630, gnl|panTro1|chrUn_random (29090222-29090523) | |
| 1317-1630, gnl|rheMac2|chr15 (105436339-105436640) | |
| 1317-1630, gnl|rn3|chr17 (21836486-21836781) | |
| 1317-1630, gnl|tetNig1|chrUn_random (11983117-11983440) | |
| 1317-1630, gnl|xenTro1|scaffold_902 (369426-369702) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-126, gnl|bosTau2|chr8 (47600692-47600802) | |
| 16-126, gnl|canFam2|chr1 (101272705-101272855) | |
| 16-126, gnl|danRer3|chr11 (28715065-28715176) | |
| 16-126, gnl|dasNov1|scaffold_258365 (200-60) | |
| 16-126, gnl|echTel1|scaffold_268049 (5796-5661) | |
| 16-126, gnl|fr1|chrUn (269678326-269678195) | |
| 16-126, gnl|galGal2|chr12 (6377774-6377905) | |
| 16-126, gnl|hg17|chr13 (18434101-18434252) | |
| 16-126, gnl|Hg17|chr9 (93498324-93498434) | |
| 16-126, gnl|loxAfr1|scaffold_10087 (34554-34428) | |
| 16-126, gnl|mm7|chr13 (48303277-48303428) | |
| 16-126, gnl|Mm7|chr13 (48303407-48303297) | |
| 16-126, gnl|monDom2|scaffold_5 (51182444-51182595) | |
| 16-126, gnl|oryCun1|scaffold_108511 (3815-3966) | |
| 16-126, gnl|panTro1|chr14 (17334803-17334954) | |
| 16-126, gnl|rheMac2|chr15 (105420201-105420050) | |
| 16-126, gnl|rn3|chr17 (21821288-21821137) | |
| 16-126, gnl|tetNig1|chrUn_random (11979248-11979136) | |
| 16-126, gnl|xenTro1|scaffold_902 (354094-353972) | |
| 305-667, gnl|bosTau2|chr8 (47604380-47604742) | |
| 305-667, gnl|Hg17|chr9 (93502027-93502398) | |
| 305-667, gnl|Mm7|chr13 (48301125-48300763) | |
| 905-1084, gnl|bosTau2|chr8 (47608976-47609155) | |
| 905-1084, gnl|Hg17|chr9 (93507522-93507701) | |
| 905-1084, gnl|Mm7|chr13 (48297303-48297124) | |
| 1317-1630, gnl|bosTau2|chr8 (47614674-47614987) | |
| 1317-1630, gnl|canFam2|chr1 (101261996-101261702) | |
| 1317-1630, gnl|danRer3|chr11 (28694555-28694240) | |
| 1317-1630, gnl|dasNov1|scaffold_177735 (770-1107) | |
| 1317-1630, gnl|echTel1|scaffold_268263 (7426-7721) | |
| 1317-1630, gnl|fr1|chrUn (269682379-269682701) | |
| 1317-1630, gnl|galGal2|chr12 (6362134-6361834) | |
| 1317-1630, gnl|hg17|chr9 (93515411-93515712) | |
| 1317-1630, gnl|Hg17|chr9 (93515419-93515736) | |
| 1317-1630, gnl|loxAfr1|scaffold_17478 (13988-14331) | |
| 1317-1630, gnl|mm7|chr13 (48291147-48290852) | |
| 1317-1630, gnl|Mm7|chr13 (48291137-48290829) | |
| 1317-1630, gnl|monDom2|scaffold_5 (51150473-51150171) | |
| 1317-1630, gnl|oryCun1|scaffold_205985 (3861-4215) | |
| 1317-1630, gnl|panTro1|chrUn_random (29090222-29090523) | |
| 1317-1630, gnl|rheMac2|chr15 (105436339-105436640) | |
| 1317-1630, gnl|rn3|chr17 (21836486-21836781) | |
| 1317-1630, gnl|tetNig1|chrUn_random (11983117-11983440) | |
| 1317-1630, gnl|xenTro1|scaffold_902 (369426-369702) |