Non-Coding RNA Search

Ss1.1-Mixn-0031f04.5

Sequence:


               
               TTCCTTAAGACCTGCTTGTGTATATAAGCTGACCCAGAAGAAGCACTGAGAATTACAGCC
TGAGATGGACGGCAGTAATTGCAAAGTTATTGCTCCTCTCCTAACTCGGAGATACCGGAG
GATAGTCACCAAGGATGGCCACAGCACACTTCAAATGGACGGCGCTCAAAGAGGTCTTGC
GTATCTTCGAGACGCGTGGGGAATCCTAATGGACATGCGCTGGCGCTGGATGATGCTGGT
TTTCTCTGCTTCTTTTGTTGTCCACTGGCTTGTCTTTGCAGTGCTCTGGTATATTCTGGC
TGAGATGAATGGTGATCTGGAACTAGATCATGATGCCCCACCTGGAAACCACACTATCTG
TGTCAAGTACATCACCAGTTTCACAGCTGCCTTCTCCTTCTCCCTGGAGACACAACTTAC
AATTGGTTATGGTACCATGTTCCCCAGTGGTGACTGTCCAAGTGCAATCGCCCTACTTGC
CATACAAATGCTCCTAGGCCTCATGCTAGAGGCTTTTATCACAGGTGCCTTTGTGGCGAA
GATTGCCCGGCCAAAAAATCGAGCTTTCTCAATTCGCTTTACTGACTTAGCAGTAGTAGC
TCATATAGATGGCAAACCTAATCTTATTTTCCAAGTTCAAGATGGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTTAAGACCTGCTTGTGTATATAAGCTGACCCAGAAGAAGCACTGAGAATTACAGCC
TGAGATGGACGGCAGTAATTGCAAAGTTATTGCTCCTCTCCTAACTCGGAGATACCGGAG
GATAGTCACCAAGGATGGCCACAGCACACTTCAAATGGACGGCGCTCAAAGAGGTCTTGC
GTATCTTCGAGACGCGTGGGGAATCCTAATGGACATGCGCTGGCGCTGGATGATGCTGGT
TTTCTCTGCTTCTTTTGTTGTCCACTGGCTTGTCTTTGCAGTGCTCTGGTATATTCTGGC
TGAGATGAATGGTGATCTGGAACTAGATCATGATGCCCCACCTGGAAACCACACTATCTG
TGTCAAGTACATCACCAGTTTCACAGCTGCCTTCTCCTTCTCCCTGGAGACACAACTTAC
AATTGGTTATGGTACCATGTTCCCCAGTGGTGACTGTCCAAGTGCAATCGCCCTACTTGC
CATACAAATGCTCCTAGGCCTCATGCTAGAGGCTTTTATCACAGGTGCCTTTGTGGCGAA
GATTGCCCGGCCAAAAAATCGAGCTTTCTCAATTCGCTTTACTGACTTAGCAGTAGTAGC
TCATATAGATGGCAAACCTAATCTTATTTTCCAAGTTCAAGATGGATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845811|ref|XP_618287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845811|ref|XP_618287.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-487, - strand, RNAz p=0.70635

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-487, - strand, RNAz p=0.70635

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               48-526, gnl|bosTau2|chr2 (72038910-72038449)
               

               
               48-526, gnl|Hg17|chr2 (233461594-233461116)
               

               
               48-526, gnl|Mm7|chr1 (87290081-87289603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-526, gnl|bosTau2|chr2 (72038910-72038449)
               

               
               48-526, gnl|Hg17|chr2 (233461594-233461116)
               

               
               48-526, gnl|Mm7|chr1 (87290081-87289603)

	48-526, gnl\|bosTau2\|chr2 (72038910-72038449)
	48-526, gnl\|Hg17\|chr2 (233461594-233461116)
	48-526, gnl\|Mm7\|chr1 (87290081-87289603)