Non-Coding RNA Search

Ss1.1-Mixn-0032c17.5

Sequence:


               
               GCTGGGGAGAGACCAGGAGGAGACGCAACCAGCCTTATTAACAAAAGCTCGATTTTGTCC
CTGTGGACCCAGCCATCAGAAGGGACTGGAGAGCCGTGGCTTGCTGCCAGGGAGGTCGGG
CTCCCTGCAAACAGTTGCAGGCATCCTTTAGCATGCCCTTCTCCCAGGGAGTCCTAATCC
TTGGCAATCGGGAAGTTTTCAAAGCCGTAGCAGCTGGAGCCTTGGAGAAGACCAGCAAAG
ACAGTGGAGTGTAGCCCTTTAAACCAGAGATTACCGGGTCAGTGACTCTTCTCCCGCCCG
CTGGCCAAGGGTTTCTAGCTTTTTGGCTTGGCAAGGAAAACCACTACCTGATTGAAAAAA
GCACTTGGGAGGCACATTAATCTTGCTGGCGATGTCAGGAGTGATCAGCGAGTTTTATTA
AAAGCTCCGGGACTGCCTGAAAGGCCTCCTTGTCTGAGTTTGAAACGAAAGGGACGTGTT
AAGATCTGGGGGCACATTGTCAGGACCCCTTGCCCTGCCCCTTGGACTATGAACTGACAT
CCTCAGAGGAAGCACAGAAGCCCTCCTTTGTTGCAGAGGTTTCACTGGTGGATGGAAAGG
AGTTGGCCTCTTTCGGCATGAGCTTCCTCAGCCAGGGTGGGCTCCGTGCCCTGCTGCTGC
TGCTGCTGCTGCTCCCAGACGGGGCCAGCCCCTCCCTCGTCAGTGTTAACCGTGGGGTCC
AGGTGATGAAAGGCAGCTCCGCCTTCCTGTCTCAAGATGACCTGAAGTTTGCCATCCCCG
AAGAGAAAGATACCTGCAAAGTGGAAGTTGTGATGAATGAGCCAATCACCCAGAGGGTTG
GGAAACTCACTCCACAGGTCTTTGACTGCCATTTCCTTCCCAATGAAGTAAAGTACACTC
ACAACGGCTGCCCAATTCTCGATGAAGATGCAGTGAAGCTTAGACTTTACAGATTGACTG
AGACAGACACCTTCATGGAAACTTTTATCCTGCGCATCTATCTCCTAGAACCGGACTGTA
ACATCATCCTTATGAGTGACAATGTATTGGAGGTGTCTGAATTCTATGGCCTGTCCCGAG
CCATTGATAAGAACCTGCTCAGATTTGATTACCACAGGATGGCTAGCCTGGAATGTACCA
TCAGGCTGGATCCTGTGGAAACTCGACTGCCAGCCCATGGCCAGATGGTATTGGTGGAGC
CCCCATTGGAAGAGCCTCGTGGAGATCAGCCGCACAGTTTTTTCCCTAAGTCTCGTATGA
TATGTCTTAATACTTAACCTGNATGTTACTAAAACAGAAATATATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGGAGAGACCAGGAGGAGACGCAACCAGCCTTATTAACAAAAGCTCGATTTTGTCC
CTGTGGACCCAGCCATCAGAAGGGACTGGAGAGCCGTGGCTTGCTGCCAGGGAGGTCGGG
CTCCCTGCAAACAGTTGCAGGCATCCTTTAGCATGCCCTTCTCCCAGGGAGTCCTAATCC
TTGGCAATCGGGAAGTTTTCAAAGCCGTAGCAGCTGGAGCCTTGGAGAAGACCAGCAAAG
ACAGTGGAGTGTAGCCCTTTAAACCAGAGATTACCGGGTCAGTGACTCTTCTCCCGCCCG
CTGGCCAAGGGTTTCTAGCTTTTTGGCTTGGCAAGGAAAACCACTACCTGATTGAAAAAA
GCACTTGGGAGGCACATTAATCTTGCTGGCGATGTCAGGAGTGATCAGCGAGTTTTATTA
AAAGCTCCGGGACTGCCTGAAAGGCCTCCTTGTCTGAGTTTGAAACGAAAGGGACGTGTT
AAGATCTGGGGGCACATTGTCAGGACCCCTTGCCCTGCCCCTTGGACTATGAACTGACAT
CCTCAGAGGAAGCACAGAAGCCCTCCTTTGTTGCAGAGGTTTCACTGGTGGATGGAAAGG
AGTTGGCCTCTTTCGGCATGAGCTTCCTCAGCCAGGGTGGGCTCCGTGCCCTGCTGCTGC
TGCTGCTGCTGCTCCCAGACGGGGCCAGCCCCTCCCTCGTCAGTGTTAACCGTGGGGTCC
AGGTGATGAAAGGCAGCTCCGCCTTCCTGTCTCAAGATGACCTGAAGTTTGCCATCCCCG
AAGAGAAAGATACCTGCAAAGTGGAAGTTGTGATGAATGAGCCAATCACCCAGAGGGTTG
GGAAACTCACTCCACAGGTCTTTGACTGCCATTTCCTTCCCAATGAAGTAAAGTACACTC
ACAACGGCTGCCCAATTCTCGATGAAGATGCAGTGAAGCTTAGACTTTACAGATTGACTG
AGACAGACACCTTCATGGAAACTTTTATCCTGCGCATCTATCTCCTAGAACCGGACTGTA
ACATCATCCTTATGAGTGACAATGTATTGGAGGTGTCTGAATTCTATGGCCTGTCCCGAG
CCATTGATAAGAACCTGCTCAGATTTGATTACCACAGGATGGCTAGCCTGGAATGTACCA
TCAGGCTGGATCCTGTGGAAACTCGACTGCCAGCCCATGGCCAGATGGTATTGGTGGAGC
CCCCATTGGAAGAGCCTCGTGGAGATCAGCCGCACAGTTTTTTCCCTAAGTCTCGTATGA
TATGTCTTAATACTTAACCTGNATGTTACTAAAACAGAAATATATAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-143, - strand, RNAz p=0.998186
               

               
               736-859, - strand, RNAz p=0.911347

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-143, - strand, RNAz p=0.998186
               

               
               736-859, - strand, RNAz p=0.911347

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               101-234, - strand, RNAmicro p=0.99436

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               101-234, - strand, RNAmicro p=0.99436

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144966, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144966, -

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-252, gnl|bosTau2|chr8 (13860910-13860659)
               

               
               1-252, gnl|canFam2|chr11 (38364510-38364913)
               

               
               1-252, gnl|dasNov1|scaffold_16101 (47568-48054)
               

               
               1-252, gnl|galGal2|chrZ_random (1489566-1489118)
               

               
               1-252, gnl|hg17|chr9 (14899884-14900365)
               

               
               1-252, gnl|Hg17|chr9 (14900399-14900153)
               

               
               1-252, gnl|loxAfr1|scaffold_5528 (85878-86364)
               

               
               1-252, gnl|mm7|chr4 (82455599-82456077)
               

               
               1-252, gnl|Mm7|chr4 (82456100-82455860)
               

               
               1-252, gnl|monDom2|scaffold_5 (99474477-99473974)
               

               
               1-252, gnl|oryCun1|scaffold_203867 (106669-106160)
               

               
               1-252, gnl|panTro1|chr11 (15119574-15120055)
               

               
               1-252, gnl|rheMac2|chr15 (62010319-62009833)
               

               
               1-252, gnl|rn3|chr5 (101924893-101925367)
               


               
               350-859, gnl|bosTau2|chr8 (13833904-13833397)
               

               
               350-859, gnl|Hg17|chr9 (14859242-14858740)
               

               
               350-859, gnl|Mm7|chr4 (82424828-82424316)
               


               
               950-1293, gnl|bosTau2|chr8 (13822122-13821780)
               

               
               950-1293, gnl|Hg17|chr9 (14849485-14849143)
               

               
               950-1293, gnl|Mm7|chr4 (82417844-82417501)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr8 (13860910-13860659)
               

               
               1-252, gnl|canFam2|chr11 (38364510-38364913)
               

               
               1-252, gnl|dasNov1|scaffold_16101 (47568-48054)
               

               
               1-252, gnl|galGal2|chrZ_random (1489566-1489118)
               

               
               1-252, gnl|hg17|chr9 (14899884-14900365)
               

               
               1-252, gnl|Hg17|chr9 (14900399-14900153)
               

               
               1-252, gnl|loxAfr1|scaffold_5528 (85878-86364)
               

               
               1-252, gnl|mm7|chr4 (82455599-82456077)
               

               
               1-252, gnl|Mm7|chr4 (82456100-82455860)
               

               
               1-252, gnl|monDom2|scaffold_5 (99474477-99473974)
               

               
               1-252, gnl|oryCun1|scaffold_203867 (106669-106160)
               

               
               1-252, gnl|panTro1|chr11 (15119574-15120055)
               

               
               1-252, gnl|rheMac2|chr15 (62010319-62009833)
               

               
               1-252, gnl|rn3|chr5 (101924893-101925367)
               


               
               350-859, gnl|bosTau2|chr8 (13833904-13833397)
               

               
               350-859, gnl|Hg17|chr9 (14859242-14858740)
               

               
               350-859, gnl|Mm7|chr4 (82424828-82424316)
               


               
               950-1293, gnl|bosTau2|chr8 (13822122-13821780)
               

               
               950-1293, gnl|Hg17|chr9 (14849485-14849143)
               

               
               950-1293, gnl|Mm7|chr4 (82417844-82417501)

	41-143, - strand, RNAz p=0.998186
	736-859, - strand, RNAz p=0.911347

	1-252, gnl\|bosTau2\|chr8 (13860910-13860659)
	1-252, gnl\|canFam2\|chr11 (38364510-38364913)
	1-252, gnl\|dasNov1\|scaffold_16101 (47568-48054)
	1-252, gnl\|galGal2\|chrZ_random (1489566-1489118)
	1-252, gnl\|hg17\|chr9 (14899884-14900365)
	1-252, gnl\|Hg17\|chr9 (14900399-14900153)
	1-252, gnl\|loxAfr1\|scaffold_5528 (85878-86364)
	1-252, gnl\|mm7\|chr4 (82455599-82456077)
	1-252, gnl\|Mm7\|chr4 (82456100-82455860)
	1-252, gnl\|monDom2\|scaffold_5 (99474477-99473974)
	1-252, gnl\|oryCun1\|scaffold_203867 (106669-106160)
	1-252, gnl\|panTro1\|chr11 (15119574-15120055)
	1-252, gnl\|rheMac2\|chr15 (62010319-62009833)
	1-252, gnl\|rn3\|chr5 (101924893-101925367)

	350-859, gnl\|bosTau2\|chr8 (13833904-13833397)
	350-859, gnl\|Hg17\|chr9 (14859242-14858740)
	350-859, gnl\|Mm7\|chr4 (82424828-82424316)

	950-1293, gnl\|bosTau2\|chr8 (13822122-13821780)
	950-1293, gnl\|Hg17\|chr9 (14849485-14849143)
	950-1293, gnl\|Mm7\|chr4 (82417844-82417501)