Non-Coding RNA Search

Ss1.1-Mixn-0032f22.5

Sequence:


               
               CTTGACCCCAGAGCAGCTTGGTCCAGGGAGAGGGGGGTGGGCACTGCTTAGCTGATCCCG
CCCTGACCCAGAGGAAGCCTCTATTTATTTATTAGCTTTTGTTTACACCCTGGAATTGAC
CCCTTCCTCCGGGGGTCTTGGGAGGGGGAGCCCAGGGCCCCTGTGACCCCTCCCTTCTCC
CTCCAGTCCCCAGTTTGTATTTAGCTGCCAAATAAGAGTCCCACTGGCTCCCCTTTTTTC
TCTGGGGGGTCAGGGTGCTGTCCCCTCCCCTCTGTTTACATCTCCCCCCTTCACCGCGCT
GTATCGCATATTGCTGAGTTTTCTATTTTTGCAAAATAAAGTGATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACCCCAGAGCAGCTTGGTCCAGGGAGAGGGGGGTGGGCACTGCTTAGCTGATCCCG
CCCTGACCCAGAGGAAGCCTCTATTTATTTATTAGCTTTTGTTTACACCCTGGAATTGAC
CCCTTCCTCCGGGGGTCTTGGGAGGGGGAGCCCAGGGCCCCTGTGACCCCTCCCTTCTCC
CTCCAGTCCCCAGTTTGTATTTAGCTGCCAAATAAGAGTCCCACTGGCTCCCCTTTTTTC
TCTGGGGGGTCAGGGTGCTGTCCCCTCCCCTCTGTTTACATCTCCCCCCTTCACCGCGCT
GTATCGCATATTGCTGAGTTTTCTATTTTTGCAAAATAAAGTGATGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-281, - strand, RNAz p=0.997762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-281, - strand, RNAz p=0.997762

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               44-281, DB313538 CTONG2 Homo sapiens cDNA clone CTONG2006539 3', mRNA 
(dbj|DB313538.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB334615 SYNOV1 Homo sapiens cDNA clone SYNOV1000023 3', mRNA 
(dbj|DB334615.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB342382 THYMU1 Homo sapiens cDNA clone THYMU1000518 3', mRNA 
(dbj|DB342382.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB353987 NT2RM2 Homo sapiens cDNA clone NT2RM2002640 3', mRNA 
(dbj|DB353987.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, AL575900 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL575900.3|), blast E-value=0, identity=94.98% 
               

               
               44-281, nbj18d08.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB386597.1|), blast E-value=0, identity=94.98%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               44-281, DB313538 CTONG2 Homo sapiens cDNA clone CTONG2006539 3', mRNA 
(dbj|DB313538.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB334615 SYNOV1 Homo sapiens cDNA clone SYNOV1000023 3', mRNA 
(dbj|DB334615.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB342382 THYMU1 Homo sapiens cDNA clone THYMU1000518 3', mRNA 
(dbj|DB342382.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, DB353987 NT2RM2 Homo sapiens cDNA clone NT2RM2002640 3', mRNA 
(dbj|DB353987.1|), blast E-value=0, identity=94.98% 
               

               
               44-281, AL575900 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL575900.3|), blast E-value=0, identity=94.98% 
               

               
               44-281, nbj18d08.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB386597.1|), blast E-value=0, identity=94.98%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-348, gnl|bosTau2|chr5 (19206184-19206533)
               

               
               6-348, gnl|Hg17|chr12 (51890961-51890626)
               

               
               6-348, gnl|Mm7|chr15 (102221434-102221102)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-348, gnl|bosTau2|chr5 (19206184-19206533)
               

               
               6-348, gnl|Hg17|chr12 (51890961-51890626)
               

               
               6-348, gnl|Mm7|chr15 (102221434-102221102)

	44-281, DB313538 CTONG2 Homo sapiens cDNA clone CTONG2006539 3', mRNA (dbj\|DB313538.1\|), blast E-value=0, identity=94.98%
	44-281, DB334615 SYNOV1 Homo sapiens cDNA clone SYNOV1000023 3', mRNA (dbj\|DB334615.1\|), blast E-value=0, identity=94.98%
	44-281, DB342382 THYMU1 Homo sapiens cDNA clone THYMU1000518 3', mRNA (dbj\|DB342382.1\|), blast E-value=0, identity=94.98%
	44-281, DB353987 NT2RM2 Homo sapiens cDNA clone NT2RM2002640 3', mRNA (dbj\|DB353987.1\|), blast E-value=0, identity=94.98%
	44-281, AL575900 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb\|AL575900.3\|), blast E-value=0, identity=94.98%
	44-281, nbj18d08.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA (gb\|EB386597.1\|), blast E-value=0, identity=94.98%

	6-348, gnl\|bosTau2\|chr5 (19206184-19206533)
	6-348, gnl\|Hg17\|chr12 (51890961-51890626)
	6-348, gnl\|Mm7\|chr15 (102221434-102221102)