Non-Coding RNA Search

Ss1.1-Mixn-0032n15.5

Sequence:


               
               GTGGTCTGGATCTGGCTGGGCACTCAGAGTATCATCTTCGAGCACGAAGAGATCGCGCTG
TTGGCGCGTCAGTATGTTGGGCTGGACCACGAGCTGGCCTTTTCTCGGCTGATCGTGGAG
CTGCGGCGGCTGCACCCAGGCCACGTGCTGCCCGATGAGGAACTGCAGTGGGTGTTCGTG
AACGCGGGAGGCTGGATGGGCGCCATGTGCCTTCTGCACGCCTTGCTGTCCGAGTATGTG
CTGCTCTTCGGCACCGCCCTGGGCTCTGGCGGCCACTCGGGGCGCTATTGGGCTGAGATC
TCAGATACCATCATCTCTGGCACCTTCCACCAGTGGAGAGAGGGCACTACCAAAAGTGAG
GTCTTCTACCCAGGGGAGACAGTGGTGCACGGGCCTGGCGAGGCAACGTTCATTCTGGGT
TGCCTGTAGTTGGGGGAAAGAGCCATAGCCTGGAAAAGGAGTGCGTTAAGGAGGCCCTCC
TCCTGTTCCTTGACCCCCTACATGAGCCACAGGTGGTTGGTTGAGGGTCACTGTGCCCCT
GTTGCTTTCCTCTATCAAAAGGAAACAAAAGAGCTTCCTATTAACTAGGTCTGATTTTTA
TCTTCTAAGACACTCTTTTCCTCATGGAGTATTCCAGCAGTTGCTGGGGAGACAGGTAAT
TAGAAATGCTCTCCTGCCCCCAAAGAGAGACAGTTGTCTTCCTTTTTTTGTATAATGAAA
CGTTGGGACTTCTAAGTAACTTTAAGGTTGAAGATTACAAGCATGGCAGGCATTGTAACC
AAACAGCTGTATTTCTCAGAAAGCCTGGCAAGTCTTGAATTTACCTCTCCCTGTCCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCTGGATCTGGCTGGGCACTCAGAGTATCATCTTCGAGCACGAAGAGATCGCGCTG
TTGGCGCGTCAGTATGTTGGGCTGGACCACGAGCTGGCCTTTTCTCGGCTGATCGTGGAG
CTGCGGCGGCTGCACCCAGGCCACGTGCTGCCCGATGAGGAACTGCAGTGGGTGTTCGTG
AACGCGGGAGGCTGGATGGGCGCCATGTGCCTTCTGCACGCCTTGCTGTCCGAGTATGTG
CTGCTCTTCGGCACCGCCCTGGGCTCTGGCGGCCACTCGGGGCGCTATTGGGCTGAGATC
TCAGATACCATCATCTCTGGCACCTTCCACCAGTGGAGAGAGGGCACTACCAAAAGTGAG
GTCTTCTACCCAGGGGAGACAGTGGTGCACGGGCCTGGCGAGGCAACGTTCATTCTGGGT
TGCCTGTAGTTGGGGGAAAGAGCCATAGCCTGGAAAAGGAGTGCGTTAAGGAGGCCCTCC
TCCTGTTCCTTGACCCCCTACATGAGCCACAGGTGGTTGGTTGAGGGTCACTGTGCCCCT
GTTGCTTTCCTCTATCAAAAGGAAACAAAAGAGCTTCCTATTAACTAGGTCTGATTTTTA
TCTTCTAAGACACTCTTTTCCTCATGGAGTATTCCAGCAGTTGCTGGGGAGACAGGTAAT
TAGAAATGCTCTCCTGCCCCCAAAGAGAGACAGTTGTCTTCCTTTTTTTGTATAATGAAA
CGTTGGGACTTCTAAGTAACTTTAAGGTTGAAGATTACAAGCATGGCAGGCATTGTAACC
AAACAGCTGTATTTCTCAGAAAGCCTGGCAAGTCTTGAATTTACCTCTCCCTGTCCAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55960011|emb|CAI14186.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55960011|emb|CAI14186.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-434, + strand, RNAz p=0.927339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-434, + strand, RNAz p=0.927339

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               276-773, gnl|bosTau2|chr8 (41415227-41414750)
               

               
               276-773, gnl|Hg17|chr9 (34627091-34626549)
               

               
               276-773, gnl|Mm7|chr4 (41878952-41878539)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-773, gnl|bosTau2|chr8 (41415227-41414750)
               

               
               276-773, gnl|Hg17|chr9 (34627091-34626549)
               

               
               276-773, gnl|Mm7|chr4 (41878952-41878539)

	276-773, gnl\|bosTau2\|chr8 (41415227-41414750)
	276-773, gnl\|Hg17\|chr9 (34627091-34626549)
	276-773, gnl\|Mm7\|chr4 (41878952-41878539)