Non-Coding RNA Search

Ss1.1-Mixn-0033h23.5

Sequence:


               
               GGCGGTGGCCGCAGTCCAGCAGGAGGCGCCATCTGCTCAGTCTCCTGGAGTTCACACAGA
TGCCGATCAGGTGCAGAACTTGGCAGTCAGGAACCAACAGGCCTCAGCCCAAGGACCCCA
AATGCAAGGCTCTGCTCAGAAGGCTGTCCCTCCTGGAGCCTCTCCTGTCTCTAGCCTCTC
CCAGGCCTCCAGTCAGGCCCTCGCTGTGGCTCAGGCTTCCTCTGGGGCCTCAGGCCAGTC
CCTCAACCTTAGTCAAGCTGGTGGAGGCAGTGGGAATAGCCTCCCAGGGTCCATGGGTCC
AGGTGGAGGTGGCCAGGCCGCTGGGGGCTTGGGTCAGCTGCCTTCCTCAGGAATGGGTGG
TGGCGGGAGCTGTTCCAGGAAGGGCACAGGAGTGGTGCAGCCCTTGCCTGCAGCCCAGAC
AGTGACTGTGAGTCAGGGCAGCCAGACAGAAACAGAAAGTGCAGCGGCCAAGAAGGCAGA
AGCAGATGGGACTGGTCAGCAGAATGTGGGCATGAACCTGACCCGGACAGCCACGCCTGC
TCCCAGCCAGACCCTGATTAGCTCAGGTAAGCTGTCACCTCTCGTTCTGTCGTTCTTCTC
TCAGAACTTGTTTGCAATCTTCAGAGTACATGTCTTTGCCTTTTTCCCTCCTGGAGTGGG
GGAGGAAAGAGAACCACAGACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGTGGCCGCAGTCCAGCAGGAGGCGCCATCTGCTCAGTCTCCTGGAGTTCACACAGA
TGCCGATCAGGTGCAGAACTTGGCAGTCAGGAACCAACAGGCCTCAGCCCAAGGACCCCA
AATGCAAGGCTCTGCTCAGAAGGCTGTCCCTCCTGGAGCCTCTCCTGTCTCTAGCCTCTC
CCAGGCCTCCAGTCAGGCCCTCGCTGTGGCTCAGGCTTCCTCTGGGGCCTCAGGCCAGTC
CCTCAACCTTAGTCAAGCTGGTGGAGGCAGTGGGAATAGCCTCCCAGGGTCCATGGGTCC
AGGTGGAGGTGGCCAGGCCGCTGGGGGCTTGGGTCAGCTGCCTTCCTCAGGAATGGGTGG
TGGCGGGAGCTGTTCCAGGAAGGGCACAGGAGTGGTGCAGCCCTTGCCTGCAGCCCAGAC
AGTGACTGTGAGTCAGGGCAGCCAGACAGAAACAGAAAGTGCAGCGGCCAAGAAGGCAGA
AGCAGATGGGACTGGTCAGCAGAATGTGGGCATGAACCTGACCCGGACAGCCACGCCTGC
TCCCAGCCAGACCCTGATTAGCTCAGGTAAGCTGTCACCTCTCGTTCTGTCGTTCTTCTC
TCAGAACTTGTTTGCAATCTTCAGAGTACATGTCTTTGCCTTTTTCCCTCCTGGAGTGGG
GGAGGAAAGAGAACCACAGACGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-385, + strand, RNAz p=0.722679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-385, + strand, RNAz p=0.722679

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               85-207, - strand, RNAmicro p=0.997234

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               85-207, - strand, RNAmicro p=0.997234

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX640639, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX640639, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-650, gnl|bosTau2|chr5 (59542869-59542286)
               

               
               67-650, gnl|Hg17|chr12 (8974294-8974896)
               

               
               67-650, gnl|Mm7|chr6 (122352048-122351475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-650, gnl|bosTau2|chr5 (59542869-59542286)
               

               
               67-650, gnl|Hg17|chr12 (8974294-8974896)
               

               
               67-650, gnl|Mm7|chr6 (122352048-122351475)

	67-650, gnl\|bosTau2\|chr5 (59542869-59542286)
	67-650, gnl\|Hg17\|chr12 (8974294-8974896)
	67-650, gnl\|Mm7\|chr6 (122352048-122351475)